RNA id: CI01000009_03006152_03007243.mRNA


Basic Information

Item Value
RNA id CI01000009_03006152_03007243.mRNA
length 1606
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000009_03006152_03007243
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3005386 ~ 3007855 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGTCCCACGGTCTAGTTAGACTGCTTAAAGAGGGCTGAACGTTGACAGCGAGCAGGGAAAAAGCATTGGAATTCAGGTTAGGAATGAACTCCCTAATGGAGAAAAATTAGAGTCAAGTGACCATCAGCTGGTCGAAGTATGTTTGATCAATACAGTCACAAGGTCTCAGGTATGCAGAGCTGGAGCCTTTACAGGAGGGTGCAAAGACAGCCATACAGCATATCATCTCTGTGTGCTCCTGTCAGTCAAACAGAGAATGATTATGCTTTATTGTTAACCAATACAATAAACTCATACATAAATTGCCTGGCGCTCTCAGCATCCTTGTCAACAGGACATATTCAGCACTATGTGAGTCACTCTCTTTTGTTTATCTAGCTGAGGATGATTTAATTAGATGACGACCCAATCAAAGTGCACCTTGGGCAGCTAACAAGCACCCACTTCTAATTAATAAGACTTGAATTGAGTGCTCTGACTGAGGCGGACTTATGCTTGCCAAACCACTTAGTGGATTCGGGGAGTAGTTGCAAAACCAGGCTTACATTTTCATAATATTAACAGGTCAGACAAAGGTTTATGTCTCTGTTTGTGATGAGAAAAATGCACAATGCAGGTCTGGTTCAGTTACAATGGTGTGATGAGCACCTTTAAAACATACCGGAGCCATGGCCTCTATCTGTCTGCCTGCCTGCCGTCTTGCCGCCAGGCTAATGGGGAAAGAATGAGAAATATTTGTGAGAGTGCTAACGCTATGCTCATGGCCGGATTTACCGCATATTGTGACATAGGCGCTGAGGATGGCTCGAGTGGACGACCGCTGCCGGTGACTTTTTAGGGTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTTTCTGCTTCCTGTTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGTGCTTCATCCTGTCAGAATAGGACTCACTCTTTCATGGATGTTAAAGAGGGCCCTTGTCATAACAGTCTGTCTCTTTGACCAGACCGATTCTGCGCTGTTTTTGCACTTTTAGCCTAGTTCATTGTGGGGGTTTTTCCCCTAAAACAATTTGATCAAGGTGAGTTAACTCTCACAGCATAGCTAAAAGCCTCGAGAAACCATTTCAGATGTCTTTGAACGGAAGGAATGAGACATTGTTTCTTGTTTGACTGCTGAAGATTCGGTTTAAGTGATTAGGTAACAAAGGACAAGGCGACATGTCACATTCCCTTTGTGTTTTGCCTGTCACAAGGGGCTGTCTTTGTGAAAATGTTTTTGAGTTGCTGAAGGCTGACAAATAATGAGAGTTAAATGCGCAGACATGCTGAATCGCATCAGATTTGGAAAGCGAAGGATGAATTCTTTTGTGCTGTCATGAACCTGGCATACAATGTAGATTTCTGTGTGGTACAATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCAGTAGAAAATTCTGCTCTGCTCAGAAATTGAATAGGTGAGTCTTTTAGTCATTATGCATGTTTGAAAAAGACATATTCCTACTTTGAGAATGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59874 lncRNA downstream 9481 2995649 ~ 2995905 (-) True G52553
TU59873 lncRNA downstream 21529 2983595 ~ 2983857 (-) True CI01000009_02975388_02982670
TU59787 lncRNA downstream 92041 2913118 ~ 2913345 (-) True G52489
TU59786 lncRNA downstream 92844 2912305 ~ 2912542 (-) True G52488
TU59776 lncRNA downstream 181458 2822962 ~ 2823928 (-) True G52478
TU59877 lncRNA upstream 38034 3045889 ~ 3046097 (-) True G52556
TU59878 lncRNA upstream 41243 3049098 ~ 3049653 (-) True G52557
TU59887 lncRNA upstream 63306 3071161 ~ 3071388 (-) True G52566
TU59836 lncRNA upstream 74136 3081991 ~ 3082437 (-) True G52518
TU59910 lncRNA upstream 140073 3147928 ~ 3149432 (-) True G52589
CI01000009_02975388_02982670.mRNA mRNA downstream 19995 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
CI01000009_02916137_02917550.mRNA mRNA downstream 87836 2915641 ~ 2917550 (-) True CI01000009_02916137_02917550
CI01000009_02904768_02914992.mRNA mRNA downstream 90139 2904691 ~ 2915247 (-) True CI01000009_02904768_02914992
CI01000009_02885473_02893975.mRNA mRNA downstream 111411 2885468 ~ 2893975 (-) False CI01000009_02885473_02893975
CI01000009_02844171_02861309.mRNA mRNA downstream 144077 2843011 ~ 2861309 (-) True CI01000009_02844171_02861309
CI01000009_03009238_03025860.mRNA mRNA upstream 505 3008360 ~ 3025937 (-) False CI01000009_03009238_03025860
CI01000009_03140599_03143635.mRNA mRNA upstream 132744 3140599 ~ 3143635 (-) True CI01000009_03140599_03143635
CI01000009_03171440_03194494.mRNA mRNA upstream 163585 3171440 ~ 3195145 (-) True CI01000009_03171440_03194494
CI01000009_03226613_03234223.mRNA mRNA upstream 217913 3225768 ~ 3234223 (-) True CI01000009_03226613_03234223
CI01000009_03235111_03242103.mRNA mRNA upstream 227159 3235014 ~ 3242103 (-) True CI01000009_03235111_03242103
TU59711 other downstream 105979 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 442853 2551724 ~ 2562533 (-) True G52410
TU59630 other downstream 764622 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59814 other upstream 253348 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1209565 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2494540 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5417966 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5850297 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU172508 True 227 lncRNA 0.54 2 NC_048566.1 47365665 ~ 47366117 (+)
rainbow trout (Oncorhynchus mykiss) TU2030498 True 438 lncRNA 0.38 1 NC_048586.1 9877812 ~ 9878249 (+)
eurasian perch (Perca fluviatilis) TU172508 False 641 lncRNA 0.47 1 NC_053123.1 30937700 ~ 30938340 (+)