G70443


Basic Information

Item Value
gene id G70443
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 780327 ~ 781693 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95049
ATTTTGGTCAAAATAAACTCACCCCACCTAAAACATCTGATTCAGTGAAAACCCGCCAATCGGCTGATGAGTTTGATTCCGTCCAatggaaaacatttattaaatattaactggatttaaaaaagtgagaataaaaacagttttcatcATTTAGTCATTAAGAAACAACGTATTCATCATCAACAGCAAACATCGACAGAAGTGAAGGCACTTTATTAGGAGCCTGAAGTTCGCTGGatttaatactaaaatactctactttactcCATTACTCCATTACACCAGTACTCGCTTCCTCACCGGGACTCTACGACTCTTGTttgttaactgtgtgtgtgtgtgtgtgtgtgtgctatcagtatatcagtatatcagtaAATCTACACTGCCTGTCAAAAGCTTGAGAAACTGATGCATGAAAATGATATTCCTGCACCGATCAGATTCAgaatgcaatatattgtatgtagttCAAGTTTAGTATTGTGAATATGGTGTGGTATGGTAAATGcctatactgtataatacttgGTTCAGAAATTCAGAATTAAtccctttatttgtttaataaatagaaaataaatatatcttttttcAAAAGTGCcttgaaaatgtaaaaggatTAAATTCTTTATGTATGtaaactatattgccaaaaatatccCAATCATTGAACTCAGTTGTTTAATCCAATCATGTCCATATCCACCAATCACAGCAATGCAGGCCAGCGGAGGATACTTTTAgcaatatagtgtgtatatgtatatgtatgttttgATATGTTTTGCACTGAAATATAAgactgtgttttagtgtgtacgtatgtatgtaagtatgtACAGTATCTCTGTtgactgtaaaactataaaatttacacacatattAATGTTTGTTAATATTTATCAAATATTAAATCTGAAAACATAGAAATAAAGCAGACTTTTggcaggcagtgtgtgtgtgaccatCTGACGGATGAGCTGCTCGGTGAAATGTATCtgaagactgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgttgttttggggCTGGACTTCAGTCATTGGTGGATGACTGGATAGGATAAATAGTGTGTGCCAAAACATTCACACCCATAATCCCCTGCACATGACCGACCtgcagtcatacacacacacacgagagagagagagagagagagagagagagagagagagagagagagagagagaacaagaaataaGGAAATATAAGAGCaaaagatgtagagagagataaatgagAAGAAAAGTGGCATATACAGAGGAATAAatagaaaggagagagagagaga
>TU95050
ATTTTGGTCAAAATAAACTCACCCCACCTAAAACATCTGATTCAGTGAAAACCCGCCAATCGGCTGATGAGTTTGATTCCGTCCAatggaaaacatttattaaatattaactggatttaaaaaagtgagaataaaaacagttttcatcATTTAGTCATTAAGAAACAACGTATTCATCATCAACAGCAAACATCGACAGAAGTGAAGGCACTTTATTAGGAGCCTGAAGTTCGCTGGatttaatactaaaatactctactttactcCATTACTCCATTACACCAGTACTCGCTTCCTCACCGGGACTCTACGACTCTTGTttgttaactgtgtgtgtgtgtgtgtgtgtgtgctatcagtatatcagtatatcagtaAATCTACACTGCCTGTCAAAAGCTTGAGAAACTGATGCATGAAAATGATATTCCTGCACCGATCAGATTCAgaatgcaatatattgtatgtagttCAAGTTTAGTATTGTGAATATGGTGTGGTATGGTAAATGcctatactgtataatacttgGTTCAGAAATTCAGAATTAAtccctttatttgtttaataaatagaaaataaatatatcttttttcAAAAGTGCcttgaaaatgtaaaaggatTAAATTCTTTATGTATGtaaactatattgccaaaaatatccCAATCATTGAACTCAGTTGTTTAATCCAATCATGTCCATATCCACCAATCACAGCAATGCAGGCCAGCGGAGGATACTTTTAgcaatatagtgtgtatatgtatatgtatgttttgATATGTTTTGCACTGAAATATAAgactgtgttttagtgtgtacgtatgtatgtaagtatgtACAGTATCTCTGTtgactgtaaaactataaaatttacacacatattAATGTTTGTTAATATTTATCAAATATTAAATCTGAAAACATAGAAATAAAGCAGACTTTTggcaggcagtgtgtgtgtgaccatCTGACGGATGAGCTGCTCGGTGAAATGTATCtgaagactgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgttgttttggggCTGGACTTCAGTCATTGGTGGATGACTGGATAGGATAAATAGTGTGTGCCAAAACATTCACACCCATAATCCCCTGCACATGACCGACCtgcagtcatacacacacacacgagagagagagagagagagagagagagagagagaacaagaaataaGGAAATATAAGAGCaaaagatgtagagagagataaatgagAAGAAAAGTGGCATATACAGAGGAATAAatagaaaggagagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95049 True 1319 lncRNA 0.36 3 780327 781693
TU95050 False 1301 lncRNA 0.36 3 780327 781693

Neighbor

gene id symbol gene type direction distance location
LOC103044579 NA coding downstream 584044 178319 ~ 196283 (-)
LOC111193040 NA coding upstream 150324 932017 ~ 938184 (-)
rps5 rps5 coding upstream 193402 975095 ~ 982603 (-)
LOC103041113 ppt2 coding upstream 206753 988446 ~ 1005877 (-)
LOC103026956 ctnna1 coding upstream 1216463 1998156 ~ 2220364 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding upstream 1653987 2435680 ~ 2488996 (-)
G70450 NA non-coding downstream 152 779362 ~ 780175 (-)
G70438 NA non-coding downstream 75837 704017 ~ 704490 (-)
G70335 NA non-coding downstream 221250 555237 ~ 559077 (-)
G70329 NA non-coding downstream 287724 492401 ~ 492603 (-)
LOC111193066 NA non-coding downstream 334798 436237 ~ 445529 (-)
G70454 NA non-coding upstream 45220 826913 ~ 828556 (-)
G70455 NA non-coding upstream 54536 836229 ~ 840154 (-)
G70457 NA non-coding upstream 63345 845038 ~ 853605 (-)
G70477 NA non-coding upstream 131385 913078 ~ 914249 (-)
G70489 NA non-coding upstream 239042 1020735 ~ 1020992 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other upstream 228193 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 1922502 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 2498463 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 2662402 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 2793868 3575561 ~ 3703751 (-)

Expression


Co-expression Network