LOC111193045 (LOC108442482,LOC102793828)


Basic Information

Item Value
gene id LOC111193045
gene name LOC108442482,LOC102793828
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3444095 ~ 3458810 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95705
TACAGGCTGAGTGGAGCTCAGAGCCTCCAGCAGCTCAGAGCCGCTCACCTGCTGGTGCTCACCTGGTCTGCGCTCCGGAACCATGGACAGCTCCTCCGGACACCTGGACGCCGCCTCCTTCCTGCAGATCTGGAAGCTGTTCGATGCTCAGGATCGAGGATATATTGAAGGAAAGCAGCTGGATGACTTTGTTGGCCAAATTATGAAGAAATTAGGGAAGAATGTAAGCAAATGGACTTGTTTTTTCTCACAGTTATAACccttctattattattattagggtaaATGTGACCTCGGTCAATGTTTAACTCCtttaaataagcagttaatCTCATTTAATGTACTTAACATTTAGTGAATTTAACAAATTTAATAAGGGAAACTGggt
>XM_022671902.1
GCCAGGCTGAAATACAGGCTGAGTGGAGCTCAGAGCCTCCAGCAGCTCAGAGCCGCTCACCTGCTGGTGCTCACCTGGTCTGCGCTCCGGAACCATGGACAGCTCCTCCGGACACCTGGACGCCGCCTCCTTCCTGCAGATCTGGAAGCTGTTCGATGCTCAGGATCGAGGATATATTGAAGGAAAGCAGCTGGATGACTTTGTTGGCCAAATTATGAAGAAATTAGGGAAGAATGTAAGCAAATGGACTTGTTTTTTCTCACAATTGtctgtacacacacagctgGCTACAGTGATTCTTCCAGAGGAGGAGAatttcctgctgctgttccgcAGAGAGACGCCGCTGGACAACAGTGTGGAGTTTATGAGGATCTGGAGACGTTATGATGCTGACAGCAGTGGATTCATATCAGCTGTGGAACTGAAGAGTTTCCTCCAGGACCTGTTTCAGCAGCACAACAAGCACATCACCCCAGAGAAACTGGAGCAGTACACCGACACCATGATGAAAATGTTTGGAAAAAACAAGGATGGCCAACTAGACTTAAAAGACCTGGCCAGAATTCTGTCTTTGAAGGAGAACTTTCTGCTGAAGTTTGAGATGGATGCCtgcagtcagacagacaggaagAGGGACTTTGAGAAGATCTTTGCTCACTATGACGTGagtaaGACAGGAGAACTGGAAGGACCAGAGGTGGATGGATTTGTTAAAGACATGATGGAGCTGGTGAagCCCAACCTGACTGGCGCAGACCTGGACAGGTTCAAAAAGGCCCTGCTCAGCCACTGCGACGTGAATGGAGATGGAATCATCCAGAAGAACGAGCTTGCTCTGTGTCTGGGTCTGAAGCTAACCCCGTAAAGCACAAAGCAGCTTACTGGACCATCCCTGACCTGCACATACAACACTAAATACTCTCacaggctaaccgctagtgctaaCCTTCCATTTAGCGTTTAGAGCAATAAGGGGCTTAAAGACTGGCACTTTGGAGGAAGGACATGAGGCATGGGAGATGCTTACTCAAGGCTTTTACTTGATACttatttaaatcttttaaagtaatatttctatatattctGATAGATtagatcattttaaactgtaaatatgtGCTTTGTTAAGTATTTGGTGTTAACTCACTTAGGGTGTACTAACACTAGGCAATCTGTGCTGTGCCCAGGCATGGTTTGATTGACTAGTGTGAGCACCCCACCAGGAAAACCACCCCCTCTCAGGAGTGTGTACTATGTCACTATGTATGTAACCGTGACTAAGATAACCGTGATTTTTAGCACATACTTTGATTATCTCTGCTTTCATCAAGAAGACATGCttccgagagagggtgcttttcatggtgggggtgctgaattcagcacaacgcCAGCACACCCACTGAGCAGTAAGTGAGGTAAAGGTGCTCAGGCACAGATTGTTTAaatgcagtgtgagtgcaggccagcaGGACAGTGGGGAGGGGGCAGAATTCCGAgcttagtgtgagtacacccttatacgtagagctgggcaatatagtTTAAATACTATATCAGGATATTTaaggacatttttacactacGCAATATTTATTGCAGTGACAAAATGCATTAGCAGTGGAAAAAAAATCGTATTCAAATTAGTATTCAAATACTTTGGTTAATATTCAGTTTTTGCTGCACCTCATCCAATTTAACAgttatttttacactgtaatgaaatgtacagttgagtcagtgttttttaaagcatgATTTGCTTTAAAAAGCATAAGAACATGTATCACaccacaataaaatataatcatattgcccagctctacttaaactcttacctcagtatatgcatgctgttgtttttgttgatttGTTTCTGGTGCTCTTGTTCtgataaacagataaatgatGTATCATTATGCTGATTTAACACTCtgacattataataataataatattttgacAGTGACAGGCA

Function

NR:

description
PREDICTED: secretagogin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95705 False 388 lncRNA 0.44 2 3457819 3458798
XM_022671902.1 True 1978 mRNA 0.43 10 3444095 3458810

Neighbor

gene id symbol gene type direction distance location
mtss1 mtss1,LOC106569924 coding downstream 36664 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 97619 3336209 ~ 3346476 (-)
rnf139 rnf139,LOC106569923 coding downstream 108309 3323898 ~ 3335786 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding downstream 126543 3298210 ~ 3317552 (-)
LOC103047641 c14h5orf24,LOC108439806,LOC107594921,LOC107668575,LOC107749736 coding downstream 416402 3023419 ~ 3027693 (-)
LOC103024174 LOC108442487 coding upstream 2427 3461237 ~ 3508996 (-)
LOC103042532 LOC108442489 coding upstream 403308 3862118 ~ 3910529 (-)
LOC103026470 LOC108435611 coding upstream 988362 4447172 ~ 4462972 (-)
LOC103041488 NA coding upstream 1499295 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 1502779 4961589 ~ 4975625 (-)
G70938 NA non-coding downstream 29056 3414588 ~ 3415039 (-)
G70927 NA non-coding downstream 134244 3309452 ~ 3309851 (-)
G70926 NA non-coding downstream 138077 3305519 ~ 3306018 (-)
G70923 NA non-coding downstream 152134 3277476 ~ 3291961 (-)
G70812 NA non-coding downstream 327006 3116884 ~ 3117089 (-)
G70951 NA non-coding upstream 1071 3459881 ~ 3522387 (-)
G70955 NA non-coding upstream 56228 3515038 ~ 3584641 (-)
G70965 NA non-coding upstream 139274 3598084 ~ 3599084 (-)
G70979 NA non-coding upstream 231505 3690315 ~ 3711137 (-)
G71040 NA non-coding upstream 406974 3865784 ~ 3938383 (-)
G70924 ndufb9 other downstream 90496 3280156 ~ 3353599 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other downstream 699023 2704195 ~ 2745072 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 2409079 1009886 ~ 1035016 (-)
LOC103023864 NA other upstream 116751 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 277816 3736626 ~ 3848624 (-)
G71175 NA other upstream 953138 4411948 ~ 4413011 (-)
G71235 NA other upstream 1423360 4882170 ~ 4884488 (-)
trnaw-cca_42 NA other upstream 1465190 4924000 ~ 4924071 (-)

Expression


Co-expression Network