LOC103047641 (c14h5orf24,LOC108439806,LOC107594921,LOC107668575,LOC107749736)


Basic Information

Item Value
gene id LOC103047641
gene name c14h5orf24,LOC108439806,LOC107594921,LOC107668575,LOC107749736
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3023419 ~ 3027693 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257736.3
CGCCCTCCTCCAATATTGTGGGTTTTTTGGAGTGAAAATGGCTGCCCTACAGATTTAATCCTCAGCGCTACAGGAGCGGAAATTTCCCCGCCGGACCTCCAGAACCGCGACCCGCTGCCCCAGAACCGGTCCCCGGGCCGCCCGGACGGCCTTCCCCCGCGCTGAGGAGAGCTGTGGAGCGGTTTGAGGGATGGGAGATGTGTCTGTTTCACAGTTAACCCTTCACAGCCCCACATCCAGATGAGaaaatgatgCATCAGGTAGCCGGCAACAGTAACGACTACGGCTTGGGCGGCCTAGCCGAAGATGGCCAGCACCCGAGCAGTCATTTCGAGTTGTGCACTTCGCAGTCCAGCAAGTTCTACCCATCCgctccacctccacctctgCAGCTGCCGCTTCCCAACCTGCCACCCCTGCCTCAGAGCATGATCAAGCCTATGTCCTGCCAGATGCAGGACACCCAGAACGATTTTCACCCCCAGCCTGTTCGGATGAGAGCTGTGGAAGCTCCAGAGGGAtccaagaaaaagaaaggactTGGCAAGTCCGGGAGACGGGGTAGGCCCGCAGGCACCACCAAATCAGCGGGGTATCGGACGAGCACCGGCCGACCCCCAGGCACCACTAGGGCGGCTGGGTTCAAAACCAGCCCCGGGAGGCCTTTGGGTACCACTAAAGCTGCCGGCTACAAGGTCAGCCCTGGCAGGCCTCCGGGAAGTATCAAAACGCTGGCAAAGCTCAACAAACTGGACTATAGTGCCTGCAATGGAGCGCCGTTCCCTTACTCCCTCATGCAGAAgcgaggagaagagaagaatgcTGGCGAATGAGGGCTTTTCTATTTATTCACAAGGATGGGAGGGTGCATGTCCGAAACTGTTGTGAATCGGCGTCCACAACAAGGCTTGCAGAGACTCTTGAGAGGCAggggaaagggggggggggacaaacaaacaaacaaacaaacaaaaattataatatttgaaTTTTGATACCTAGGCTTAACACTTAGTATGTGTTACATTGTTATGATCATTTTGTGTATCTATATCCAAAGAGCATTATCACTCTATCTCAGTCTTAAAGGAGCAATAAGTAGATTTTTTTCGTgattaaaaataacacataaCAAGTAACAAATGTTCAGAAAAGTGAAACGTACTTGATGTTAGTACTGTATGTGTGAACTGTAATATATAGCAATTAAAGGTGCGGCGGACCTTTATTTTCTACTTGCCTTTCCTAGTGTCAAGGAGTCAAAAGTAGTATGATTGAAAGACGGATCCCTAGCATAAAATACTGCTTATTGCTCCTTTAAACCTTATATTAACCTGCTGTACATATGTGCATGATGGTAGTcttgtgaaataaaaaacacagtatcgaAACTGATATTATATTAGAATTTTTGGCCGAGTAGTCTTTAATCGAGTGAACGTTTAAGGAGAGAAAAatgctttttgtgtttgtttttaatctttGTTACTTCACTTTTGATAATGTGACTGCTAGGAACAAGGTATTTTGCTGTTCTGTAGCACATCTGATTTTCTCattctgattttaaaatgcttAACCACAGGCACAATTATACCTATTcctttttctctgctgtgtATGTTAATGTGCTATGCTTGTATTGCCCTTGGTATGATCtcacttttatttgtatttatggaAAATGTGGTGCTCTTTTATGACATAGTGTTGAGTAACTTTGAATAATCTCATTTTATTTGGGGGGTATAGCATCAGTGTAATGCTTTGACACCAATTTTGTAACTGTACTGTGAGTCCATAGCTTAGTGTAACCCATAGTGTTCTGCTTTTCACAAGGATTGTGAAAAAATATGTTGACCACAATCTGCAACGCCGGGTTggttcagtttttgttttcGACTAATGGACAAATTAGTGTTGTGTAAGCAAATACATTCAGtctgatacaaaaaaataaataaataaataaacaaacaagta

Function

NR:

description
PREDICTED: UPF0461 protein C5orf24 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257736.3 True 1983 mRNA 0.45 2 3023419 3027693

Neighbor

gene id symbol gene type direction distance location
LOC103025117 NA coding downstream 3666 2982047 ~ 3019753 (-)
rmnd5b rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding downstream 40773 2958649 ~ 2982646 (-)
anxa6 anxa6,LOC107750364,LOC107594885 coding downstream 206884 2764145 ~ 2816535 (-)
dctn4 dctn4,LOC107749746 coding downstream 344514 2661511 ~ 2678905 (-)
LOC103022920 NA coding downstream 487438 2500988 ~ 2535981 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding upstream 270517 3298210 ~ 3317552 (-)
rnf139 rnf139,LOC106569923 coding upstream 296205 3323898 ~ 3335786 (-)
tatdn1 tatdn1 coding upstream 308516 3336209 ~ 3346476 (-)
mtss1 mtss1,LOC106569924 coding upstream 334878 3362571 ~ 3407431 (-)
LOC103024174 LOC108442487 coding upstream 433544 3461237 ~ 3508996 (-)
G70769 NA non-coding downstream 67245 2954612 ~ 2956174 (-)
G70771 NA non-coding downstream 71502 2951573 ~ 2951917 (-)
G70770 NA non-coding downstream 73516 2947441 ~ 2949903 (-)
G70738 NA non-coding downstream 76445 2945157 ~ 2946974 (-)
G70736 n4bp3 non-coding downstream 79812 2943353 ~ 2943607 (-)
G70795 NA non-coding upstream 55283 3082976 ~ 3083205 (-)
G70809 NA non-coding upstream 83112 3110805 ~ 3115995 (-)
G70812 NA non-coding upstream 89191 3116884 ~ 3117089 (-)
G70923 NA non-coding upstream 249783 3277476 ~ 3291961 (-)
G70926 NA non-coding upstream 277826 3305519 ~ 3306018 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other downstream 278347 2704195 ~ 2745072 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 1988403 1009886 ~ 1035016 (-)
G70924 ndufb9 other upstream 252463 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 416402 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 547868 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 708933 3736626 ~ 3848624 (-)
G71175 NA other upstream 1384255 4411948 ~ 4413011 (-)

Expression


Co-expression Network