CI01000009_05418094_05487944 (CLASP1, CLASP1A)


Basic Information

Item Value
gene id CI01000009_05418094_05487944
gene name CLASP1, CLASP1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5417979 ~ 5488501 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_05418094_05487944.mRNA
ATATTAATAAGCGTGTGCTCTTGTTTTGCCTTGATTGCACACGCTAAAGGACTTTTTTTTTTTTTTAGTTTTTCCTCTCTACTGCCACACGGGTGGTGGCAGGACATCGTAGGCCATGGAACCCAATATGGAGTACTGTCTGACCCAGGTGCTACAGAAGGATGTGGCCCGCAGGTTGCAGATGGGTCCAGAGCTCATTGACTACATCACAGATTCAGACAAGTGTCATGACCTGGAGAGTGACCAGACTGCGCTAGATAAAATGGTGGACGGTATCGCCACATCTTGGGTTAACTCTAGCAACTTCAAGACATCTCCCTGTCAGTCTTACTTCAGCAGCGAGATGGGAAAGGATGGCAGAGGTGCTGATGTGGACGTGAGGTTGGCTTTGTTAGGAATGGACCTACTATCTGCCTTAGTGACAAGATTACAGGACCGATTTCGTCCCCAAGTTGGTACAGTTTTACCCAGCTTGATAGATCGGTTAGGCGATGCCAAAGATCAAGTCAGAGACCAAGATCAAACCCTGCTGCTAAAGATCATGGAGCAGTCAGCTACACCTCAGTACATATGGGACAGAATGTTGGGGGGTTTCAAACACAAAAACAACCGGACCAGAGAGGGAGTTTGTCTCTGTCTCATTTCAACTCTAAACACATATGGTGCCCAAGGCTTGACTCTGAGCAAAATTGTACCACATATATGTAATCTACTCGGAGACCCTACAAGTCAGGTTCGGGATGCGGCCATGAACTGCCTTGTGGAAATATACAGGCATGTTGGAGAGAAGGTTAGGATTGACCTTAGCAAAAAAGGACTGCCGCAATCAAGGTTGAATGTAATTTTCAGCAGATTTGATGAAGTCCAAAGATCTGGGAACATGATCCTCTCCTCAGGTTCAGATAAGAACTTTGATGACGAAGACTCTGTGGATGGGGGCAGGTCCTCCTCCTCTTCCTCTTCTAAGGGCTTCTCCAGCAGCAGGAGAGGGGGCAGCATGGGCTCAATGAGACGACCTAGTTCTGCCTCTGGATCCAGGGCTGCAGGGAAGGACAGTGTCAGCGCGGGAGCTGTGGATGAAGAGGATTTTGTCAAAGCTTTTGAAGATGTACCTGCAGTGCAAATATATTCCAGTAAGGATTTGGAGGACTCCTTAAATAAGATCCGGGAAGTTTTGTCAGATGACAAGCAAGACTGGGAGCACCGCGTCACTGCTCTGAAGAAAGTGCGGTCGCTTGTTCTGGCTGGTGCGACTGAGCATGAGGGTTTCCTTCAACATCTACGGCTTTTAGAAGGTGCCTTCAAGCTGTCGGCTAAAGATCTTCGGTCCCAAGTGGTTCGAGAGGCCTGTATCACATTAGGGCATCTGTCTTCAGTGTTGGGGAATAAATTTGATCATGGGGCTGAAAGCATCATGCCTACGCTGCTCAACTTAGTGCCCAACAGCGCCAAAGTTATGGCCACATCCGGAATGGCAGCCATCCGCCTCATCTTGCGACATACACACTTCCCACGCCTTATCCCGATCATCACCAGCAACTGCACTTCTAAATCTGTGGCTGTTCGAAGACGGTGTTATGAGTTTTTAGACCTGTTATTGCAAGAATGGCAGACACACACTCTAGAGAGGCATGTGGCGGTTCTCACTGAGACCATCAAGAAGGGGATCCATGATGCTGACTCAGAGGCCAGATCTGTGGCAAGAAAGTGTTACTGGGGATTCCATGGCCATTACAGTCGGGAGGCAGAGCACCTGTTTCAGGCGTTGGAGTCGACCTATCAGAAGGCCCTACAGTCCCACCTGAAGAGTTCTGACAGTATAGTGTCTCTACCACAGTCCGACCGCTCCTCCTCAAGCTCACAGGAGAGCCTCAATCGACCGCTGTCAGTGAAGAGTGTCATTGGAGGCCCGGTTACAAGAAGTAAAGTGATCGGCTCTAGGGTGTCCTCAACACCTGGTGCCCTCCAGCGATCTCGCAGCGACATAGACGTGAATGCCGCCTCCAGTGCCAAATCTCGCATGTCAACCGCAACCTCCCAATCTCCCTTCAGCTCTGCTGCAGCCTTGCCTCCAGGCTCCTACGCCTCCCTGGACGGTGCAACTGGTAAAATAGATGGTCGTGTGCGGACGAGAAGGCAGAGCTCAGGGAGTGCAGTCAGCGCCAGTAGCACTGTGACAGACAGCCGTGGTCGAAGCAGAGCTAAAGTGGTGTCTCAGTCCCAGCCCGGCAGCCGATCCAGCTCTCCTGGGAAGCTCTTGGGACACGCATATGGCAGAATTCCTAGAGCCACTGCCCCAACAACACCCTCAGACAAGTACTCTAGGGTCCCACGAAGCCAGGGGTGCAGCCGTGAAACCAGCCCCAGCAGACTGGGCCTAGATCGCTTTGGCCTGATCCATCAGGCTCGCATTTCTGCATCTGTCAATGCTATGAGGGTACTAAACACTGGCACAGAAGTGGAGGCTGCCGTAGCTGATGCTTTGCTGTTAGGAGACTCCAGGAATAAGCGCAAGCCTTTGAGAAGGAGGTACGAGTCTGATGACGATGCCAACAGTGATGCGTCCAGTGCCTGCTCAGAGCGTTCCTATAGCTCTCGTAATGGAGGCATTCCTCACTACCTGCGTCAGACGGAGGATGTCGCCGAGGTGCTAAATCACTGTGCCAGTTCCAACTGGTCTGAGAGGAAAGAGGGCCTGCTGGGTTTGCAGAACTTGCTAAAGAGTCAGCGCATTCTCAGCCGTGTGGAGCTGAAGAGGCTGTGTGAGATCTTCACCAGGATGTTTGCAGATCCTCACAGCAAGGTGTTTAGCATGTTCTTGGAGACACTAGTGGACTTCATTACTGTGCACAGAGAGGATCTCCAGGACTGGCTTTTTGTTCTGCTCACTCAACTACTGAAGAAAATGGGAGCTGACCTCTTGGGCTCAGTCCAAGCTAAGGTCCAAAAAGCTCTGGACATCACACGGGAGTCTTTCCCCTTTGACCAACAGTTTAACATTCTAATGAGATTCATTGTTGATCAGACTCAAACCCCCAATCTGAAGGTGAAGGTGGCCATCCTGAAATACATCGAGTCCCTGGCACGGCAGATGGACCCTGCTGACTTTGTGAACTCAAGTGAGACGAGATTAGCCGTGTCTCGCATTATCACCTGGACCACAGAACCCAAGAGCTCTGACGTTAGAAAAGCAACAAGTGGTCATCATCAGTTTCTCTTTTATTGTCTGTTACCCTATTGTCCTGACACGATGGCCCAGACCCTTCATAACTGGGCATATGAGGAGTTGTCAGGCAGGCCCAACACTACAGCTCTACTTCCTGGAGAGGGTCATCTGGAGGAGAGGTGCAAGCAGGAGCACTGCAGTCACAGTTCCTTATACAGTCTCTCTTTCTATTCTGAGTTATCGCCGCCAGATTTTCTCAGCATGTATGAGTGCGCTCCCATTCATTGCGGTGTTAGTATTTGTGCTGGATCTCATGAGCTGAACACTCCTGAGTTCACCATGCTGCTGGGCGCTCTGCCTAAAACATTCCAGGATGGAGCCACCAAGCTCCTGCATAACCATCTGAAGAACTCAAGCAACACAAGCAGCGTGAGTTCACCAAGCAATACAATGGGCCGCACGCCACCCCGGCACCCCACTAGCAGGACCAGTCCTCTCACCTCGCCCACAAATTGCTCCCATGGGGGTCTGTCACCCAGTATGCTGGAGTATGACACAGAGAACATGAATTCTGATGAGATCTTTAGCTCACTGCGTGGTGTCACAGAAGCCATCCAGAGTTTCAGTTACCGCAGCCAAGAAGACCTGAATGAGCCAATCAGACGTGATGGGAAGAAGGATGATGCCACTGGGAAGGAAGGGGCATCTCCAGGGTCTGACGCAAGACTGGGATTGGATGTAGTGGAGGGTGGCCGTACCGCTTTGGATAACAAAACATCTTTGCTCAACACACCGTCCCCGCGGTCTTTCGCTGTGCCACGGTCGAGAGAGTTTGCACCCTATGGCTACGGAGACACGATCACGGCCTATGACAAAAGTGCCCTGAAAGAGGCTGTCTTTGACGACGACGTGGAGCAGTTCCGAGACTGCCGTCGGCAAGACTGTGGTGAGAACAAGATGGTGCTGCCCAAGGGCTTTACTCCTGATTTGGTGGCAGACCTACTGAAGGAGCTGTCTAATCACAATGAGCGAGTGGAGGAGAGGAAGGGGGCGTTGATCGAGCTGCTGAAGATCGCTCGTGAAGACAGCCTGGCTGTGTGGGACGAGCACTTCAAAACAATCCTATTGCTGCTATTGGAGACACTGGGGGACAAAGATGTCAGTCAAAGCACCATAAAACTTGCATGCTCAATTGGCACATTCTTTATAATCCTTAAGTCTTTCATATGTCAAGTTGCTTTTTTATGTATGTATGTATTTGTAGTGGAGATCCTGAGGAACCAGCCAGCGCGTTTCAAGAACTATGCAGAACTCACCATCATGAAAACACTAGAAGCCCACAAGGACTCTCATAAAGAGGTGGTTAGGGCGGCTGAAGAGGCTGCCTCTACATTGGCCGGCTCCATTCACCCAGAGCAATGCATCAAGGTGCTGTGTCCCATCGTACAGACTGCAGACTACCCCATCAACTTGGCTGCTATTAAGATGCAGACCAAAGTGGTTGAGCGCATTGCCAAGGAGTCCCTGCATCAGCTGCTGCCAGACATTATCCCTGGCCTCTTACAAGGCTATGATAACACAGAGAGTAGCGTTCGCAAGGCCAGCGTGTTCTGTCTGGTGGCCATCTACTCTGTGATTGGTGAGGAGCTGAAGCCACACTTGGCCCAGCTCACGGGTAGCAAGATGAAGTTGCTAAATCTGTATATTAAGAGGGCCCAGACCACCAACAGCAACAGCAGCAGTTCTTCAGATGTGTCCTCTCACAGCTAGCCATATGGAGTCTAATCAGTGCCCTACATGTGCATTTGGGAACATAGTTGTGCCTCCTCCAGACATCTTTTTTATTGCTTCATCACAATCTAGCTGGATTTTCCCAGAGAGATGTGTTGCTCACTGCAATCAAACTTTTCTTTTCATCCAACTCCTGGAAACCTCTTAGTTTGTCTCTCATGCATCTTTCCATCTGTGGAACGTTGAATGTAAAGGGGTTTGAATCGAGAAAAATGCATGCAGAGCTTCCATGATAGGCATTGCTTCCTTAATTGGAGGAAACAGGCTTTCTTCATCTTCTGAAGAGGTGAATCGTTAACTAAATTTATTAGTAATAACTTATTCGTGTTTACAAGTGGTGTTAAAGGTTTAGTTGAGTTATTTGGATATTTTAAATGGGCACAGTTGGTTTAACTAATACACCACTTGAATCTCAGTTGATGCTAGTGGATCATTTGGCTGGCCGAGTGATAAATGTTAAGAAAAGAGAAAAATATAAGTAATTTGTAGGTTTGGCTACAATGACAACCAAAAAACAAAACAAAACAAAAGTAGGA

Function

symbol description
clasp1a Predicted to enable kinetochore binding activity and microtubule binding activity. Predicted to be involved in establishment of mitotic spindle localization and mitotic spindle assembly. Predicted to be located in Golgi apparatus; chromosome, centromeric region; and kinetochore microtubule. Predicted to be active in basal cortex; kinetochore; and microtubule cytoskeleton. Orthologous to human CLASP1 (cytoplasmic linker associated protein 1).
clasp1 Enables dystroglycan binding activity; kinetochore binding activity; and microtubule plus-end binding activity. Involved in several processes, including microtubule cytoskeleton organization; negative regulation of supramolecular fiber organization; and positive regulation of extracellular matrix organization. Acts upstream of or within cell division and establishment of spindle orientation. Located in several cellular components, including basal cortex; kinetochore; and microtubule cytoskeleton. Colocalizes with focal adhesion.

GO:

id name namespace
GO:0005881 cytoplasmic microtubule cellular_component

KEGG:

id description
K16578 CLASP1_2; CLIP-associating protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_05418094_05487944.mRNA True 5493 mRNA 0.49 41 5417979 5488501

Neighbor

gene id symbol gene type direction distance location
CI01000009_05411199_05413237 NIFK coding upstream 4306 5411199 ~ 5413673 (+)
CI01000009_05384160_05398034 CACNB4A, CACNB4 coding upstream 19942 5384160 ~ 5398037 (+)
CI01000009_05261948_05270622 SEC22A coding upstream 146892 5261948 ~ 5271087 (+)
CI01000009_05194517_05218620 PDIA5 coding upstream 199227 5193998 ~ 5218752 (+)
CI01000009_05106385_05110040 NA coding upstream 307838 5104947 ~ 5110141 (+)
CI01000009_05491807_05498189 TFCP2L1 coding downstream 3306 5491807 ~ 5498799 (+)
CI01000009_05502414_05506275 NA coding downstream 11470 5499971 ~ 5506275 (+)
CI01000009_05522736_05523662 NA coding downstream 34235 5522736 ~ 5523662 (+)
CI01000009_05523743_05526184 NA coding downstream 35242 5523642 ~ 5526249 (+)
CI01000009_05538212_05539688 NA coding downstream 49711 5538212 ~ 5539727 (+)
G53383 NA non-coding upstream 8306 5409457 ~ 5409673 (+)
G53382 NA non-coding upstream 9215 5408444 ~ 5408764 (+)
G53338 NA non-coding upstream 15751 5399593 ~ 5402228 (+)
G53352 NA non-coding upstream 50029 5365850 ~ 5367950 (+)
G53257 NA non-coding upstream 373039 5044705 ~ 5044940 (+)
G53388 NA non-coding downstream 33741 5522242 ~ 5540638 (+)
G53396 NA non-coding downstream 66269 5554770 ~ 5554990 (+)
G53402 NA non-coding downstream 85133 5573634 ~ 5573866 (+)
G53584 NA non-coding downstream 93956 5582457 ~ 5582685 (+)
G53632 NA non-coding downstream 253751 5742252 ~ 5742466 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2208995 3202207 ~ 3208984 (+)
G51529 NA other upstream 2355392 3062033 ~ 3062587 (+)
G51274 NA other upstream 3067493 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3516553 1897343 ~ 1919516 (+)
G51122 NA other upstream 3736013 1680146 ~ 1681966 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 371801 5931718 ~ 5943899 (+)
G53651 NA other downstream 757063 6245564 ~ 6248392 (+)
G56100 NA other downstream 3640799 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4364858 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location