CI01000009_05502414_05506275


Basic Information

Item Value
gene id CI01000009_05502414_05506275
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5499971 ~ 5506275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_05502414_05506275.mRNA
ATATAAATAGGGTGAATTTGGGTAATGTGGGACACCTAAGCTCCAGTGTATTTCTTTCCTGTTCTAACAAAATTTAGTCAACAGGACTTTTACTATAGGTTTAGCATGGATGTCATGTGACTGAAATTACATGACTTCATGGGGTTGATGCCACAGAAAGGGGCAGGGCACTTGTCAATCAAGACGCTCCCCTGGCAATTGCATGACAAGGTCAGTGACAGGATTCTGACTAGATTAATGTTAAGGACATAAATCTGTCATAAATAAGACAATGTTCCTAATTGTTGTCAAATTATGTTTGTGATCTATTCCAGCAACAAAATATGTATTAAAGTGTTGAAAATGTGTTTGTTTTTTTCTTTCAAACATTTTTTTGTTGTCCCACTTTATCAAATAATGACAAGGGCGTAGATCTCATTACAACTTAGGGGTAGACCACTGATATACTTTAAAAGTAACTTTAATATAATGTTAATATATGCCATAATGAGAAATGGATGTTAATGTGGGCTATTGGAGGCTATAACATTAGCTTAAGTTCACAGTAGCTAGCAGCTAGCCAAACCAACTAGCTAGAGAGATGCTACAGAGATGGAATCTGGGAAACGTATTCCAAGCAAAGGTACCAGGATGAAGTAAACCATTACTTCATTTCCCAAATTCCCAGTTAGTTTAGTATAGCACTAAGTAGGAGGGGGGGACCTCCCCGGGATCTGCGCCCAGGCCAGTTCTGTTCTGTATACAAACACACACACACACACAAACACAGAGTATTTTGTAGTTGCTCATTACAAATGTGAGTTATTAGTCTGAAAATAAAATATGAAAAAATACTAAAAAAAAAAAAAACTAAAATATGAAAATATCCATGACTTTATGAAAAAACATGACTTGCCTATATGTGTATATGAATTAATGGAATTTCTATGAATATACTTTTTCTTATTGAGATTTCTGTACTTGTCATTTTTTCATATTGCTTTTTAAAAATTGGTGATATTGTGTTTGGCATGCATAAAGTATGGTGAATAAAGGCTTTTTTTTAGGCCTAATACATATGTCCCAGATTATCAAATTCAGGCAGAATTATTTTTTTGTTGTTGTTGTTGTTGTGGCACAAAAACACTAATAGGTGTGGCATGTCTCCTCTGGGTATAATATTTACTTTCTTTCTTCTTGTGTGGTTAGAAAACATCTAAGGAATTTCAGAAAAGTCTAATGTGTTGATCTATAATATGTTAGTTAGATATTTAAATAATCCCAGTCAAAATTGCCAAAATGTCCTAGATTACCCGAATTCACCCTAAGAAATATCCACTACTTAGCCTCTTATTTAATGTTTTACTACCGAAGTTTGTTAAACTAAACAAAAAAGAGTAGTCTATTTTTCTCCTCCTTATGCACTATGAGGGTCGCGCGCCAAATTGATTACCAGAAGATGGCGCCCGCAGCTGAAACAGCCATCCATCCATTTTCCAAACAGCTGGTCCCATAGATATATATACATAGATTTCATATTCGACCGCTCCAGACACGTCGGCGCGCTCGTCATCTTGCAACGGTCAGTGTGTCATCACTCACAGTAAGAATCAATTTCAATCAATCACAACATTGCGCAGCTTCTGGTTGTGAAACCACCCAGATTTAAATTCCCGAAGAAATAGGATAACCATTCACAAGTGAAAATGTGTTGGTTTGTGTTTTTATATGCATTAACTCAATATTACAGGGTTTTACTACGGTACCTTTTTAATGTTTTTACTTTTACAATGGTAACTTTTTAATGTCGTGTTAGCTGATGCCCGTGTCTTGTTGTATTGTGTTAGTTTAGCAAAATCATCTGCTGAAGTCTATTTCATATATAGATATTCATACATGCGTCTAACTACGGTTGCAGACGCACGGACAACTTGCTCTCGAATGTCACGGACCGGATTTGACCGTTCCAATATGGCTGACAGCTTGCGGCTATGATAGCAGGCGCGGCCCATAGAGTAGGCCGCTAATGAGGAATCTATGAATATATATATCTATGGCGGGTCCAACGTGGCTACAGCATAATATCATCCAAGTATAAATTCCTTTTAATTGATTATTTAATTGTTAATTAAGGTTTATACATAGTGTCCATGACAGTTCAAGATAGATCTTTTCAGTTTGCCAAGTTTCAAGAAATATTATTAAAAAGCAAGCACAAACTATGCAAAAGCGGTAGTCCTTCCACCACACTCAGTCTCCGAATTCGCTCACTCGTTTTCATTCACTCCCTCAAGTGAACTATATTAGTGGACGAATGTAGGGAATAGTGAATGATGATATAGGGTGCGATTTCGGACGCAGCTATTTTTTGAAGGGTCTTGAATATTTTAGTCAGGCATAGTATGAGTCAGTCAGCTAAGTGAAGGACCCCACGCAGCACGCACACACGTGTTTGTGTACAGCCATGGCGGACATGCAGATGAAAATTCTCCGCAAGAAAATTCAAAAGAGAAATGAAAAAAATAAACAACGGAAACTGCTCAGATCTCAGAAGGAAGAAGAAGAAGAAAACGTTAGAGAGGTGAAGGTTGTGCTGGAAGAAGCTGATGTGACCAGTGATTCTGCTCCAAAAGTCATTGAAAAACAGCAGCAAAGTGTCTCCACCGAGGGCGGTGAAACCTCACAGAAAATCAAGAAGAAAAAGAAAAGAAAATTGGATGGCACAGAAGACTCAACATCCAGTGGGAAAAAGGTCAAAAAGCAGGATGAAGTTAAAGAGACAACGGAAGCATTGGTGGGAGAAGAGCAACAGAGTGAAATGCAGGAGGGGGAATGTGCAGAGCCTGTGAAGTTTGCAGAGAATGGAAATGAAAAAGAGGGATCAGCTGAGGATGATAGTGATGAAGATGGTCCACAGCTTCCTTCTGGTCTGACAGGTGCGTTTGAGGACAGGTCATTTGCATCTTTGGCAGAAGTGGTCAGTGAGAATACACTGAAGGGAGTGAAAGAAATGGGCTTTGAAACCATGACTGAGATCCAGCACAAGACCATACGCCCCCTGCTGGAAGGGAGAGATGTGTTGGCAGCAGCTAAAACAGGAAGTGGTAAAACTCTGGCTTTCCTGATTCCCTCCATTGAGCTTATCTACAAACTCAAATTCATGCCAAGGAATGGGACTGGAGTGGTCATTCTGTCTCCCACTCGTGAGTTGGCTATGCAGACATATGGTGTGCTGAAGGAGCTGATGACGCATCACGTGCACACGTACGGCCTCATCATGGGAGGCAGCAATCGATCTGCTGAAGCCCAGAAACTCGCAAATGGAGTCAATATTGTGGTTGCTACACCTGGCAGACTTCTCGATCACCTGCAGAACACGCCTGGGTTCATGTTTAAGAACCTCCAGTGTCTGATCATTGATGAGGCTGATAGGATTCTGGAGGTTGGCTTTGAGGAAGAACTTAAGCAGATCATCAAACTACTGCCTAAAAAGAGACAGACCATGTTGTTTTCAGCAACACAGACACGTAAGGTGGAGGATCTTGCGCGCATCTCCCTCAAGAAGGAGCCACTGTATGTTGGAGTGGATGACAACAAAGAGACAGCCACTGTGGAAGGACTTGAACAGGGATATGTCGTATGTCCTTCAGAGAAACGTTTCCTGCTGCTCTTCACGTTTCTGAAGAAGAATCGTAAGAAGAAGCTGATGGTGTTCTTCTCGTCCTGCATGTCTGTGAAGTACCACTATGAGCTGCTCAATTACATTGACCTGCCCGTCATGGCCATCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_05502414_05506275.mRNA True 3769 mRNA 0.40 9 5499971 5506275

Neighbor

gene id symbol gene type direction distance location
CI01000009_05491807_05498189 TFCP2L1 coding upstream 1172 5491807 ~ 5498799 (+)
CI01000009_05418094_05487944 CLASP1, CLASP1A coding upstream 11470 5417979 ~ 5488501 (+)
CI01000009_05411199_05413237 NIFK coding upstream 86298 5411199 ~ 5413673 (+)
CI01000009_05384160_05398034 CACNB4A, CACNB4 coding upstream 101934 5384160 ~ 5398037 (+)
CI01000009_05261948_05270622 SEC22A coding upstream 228884 5261948 ~ 5271087 (+)
CI01000009_05522736_05523662 NA coding downstream 16461 5522736 ~ 5523662 (+)
CI01000009_05523743_05526184 NA coding downstream 17468 5523642 ~ 5526249 (+)
CI01000009_05538212_05539688 NA coding downstream 31937 5538212 ~ 5539727 (+)
CI01000009_05685508_05688628 NA coding downstream 179233 5685508 ~ 5688633 (+)
CI01000009_05696405_05703318 NA coding downstream 189396 5695671 ~ 5703921 (+)
G53383 NA non-coding upstream 90298 5409457 ~ 5409673 (+)
G53382 NA non-coding upstream 91207 5408444 ~ 5408764 (+)
G53338 NA non-coding upstream 97743 5399593 ~ 5402228 (+)
G53352 NA non-coding upstream 132021 5365850 ~ 5367950 (+)
G53257 NA non-coding upstream 455031 5044705 ~ 5044940 (+)
G53388 NA non-coding downstream 15967 5522242 ~ 5540638 (+)
G53396 NA non-coding downstream 48495 5554770 ~ 5554990 (+)
G53402 NA non-coding downstream 67359 5573634 ~ 5573866 (+)
G53584 NA non-coding downstream 76182 5582457 ~ 5582685 (+)
G53632 NA non-coding downstream 235977 5742252 ~ 5742466 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2290987 3202207 ~ 3208984 (+)
G51529 NA other upstream 2437384 3062033 ~ 3062587 (+)
G51274 NA other upstream 3149485 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3598545 1897343 ~ 1919516 (+)
G51122 NA other upstream 3818005 1680146 ~ 1681966 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 354027 5931718 ~ 5943899 (+)
G53651 NA other downstream 739289 6245564 ~ 6248392 (+)
G56100 NA other downstream 3623025 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4347084 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037334 ddx18 coding NC_007120.7 CM002893.2 38314466 ~ 38352220 (+)