CI01000009_05761849_05767932 (CREB1, CREB1A, CREB1B)


Basic Information

Item Value
gene id CI01000009_05761849_05767932
gene name CREB1, CREB1A, CREB1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5760983 ~ 5768703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_05761849_05767932.mRNA
CTATAAAAGAAAAAGCTATATGATGACACCTTTATTGCAGTACTTAATTTTTATCACTGGCCAGTGCACTAGTAATTTTAAACTCTCATATTAGATGTTATTGTAGATTAATGCAGAAATAAAGATTTTCAGAGCTCCTAGGGGTTGCGTACTGGGACTTTCTTTAATGAGAACCTACAATCTCTTTACATTCACGCTGGGATTTCGATTAATTTCTGTTGTGCACTGCAATGCAATGCGTCTCTTAGTGTGGCCTATGTAGGCGTACGTTTAGAGAGAGACCTGACAATATTCTTTGCGTAAGCATCAAAAGTCAGTGTTCAGTGTATCCTGACTGTAAACATGTTAAGCTAGGATTAAGCAGTTGGTTTCTGTATCTTAAATTTAGACTAGACATATTTTCTTCCCTGGACAGGAAAGGTTTCTGGGAAGAATGTTTATCAATGGACATGCAGTGTTGCAGTCTCAGTTTTTAGTCCAAACTGCCATAGTATTGATTCATAACTGTGCTCGTCTCGAGTGCAGGAAATCTGCACCCTTATTTCCGACATAATGTCAAATGATTCAATTAAAACTCCATATAGAGTTGCAGCACAGGAGCCGTACTTAACTAATGTGTGTCTATATTTGGATATTCTAAAATTAACTCCCTTTCCAAGAAAGTCTATTGCTTCATTTTCATTTGCTTGTCTTCTAAAACTAGAAAAAAATTTTTTTAGTGTATTTTAGCCTTTGTTTGGGTTGGGTTTTTGTCATATCTTAATCATGTTACAGTACTATACCAGCTAAATATTATGATACTAAGTAGTATACCACTCACTTGGATGCATTGTTTGTTATAGCATGTCAATGACTGTGATACTACAATGGCACCAGGATGTCATGCAACACTGATTTCCACAGTAGAAGAGAGTGAGGATTTAACGGAGTCAGTGGACGGTGCGAAGATTCTGCCTAGGTTCCCCTCTTATAGGTATGTATGCTTCATCTGCAATGCCACATCCAAAGTTTCAGCTAACTCAATGACCATGGAGTCGGGAGCCGATGCCCAGCAGGGTGCAGACACTGCGGTCTCTGAAAATGAGAACCAACAGCTCACACAGGCCCAAATCGCCACTCTTGCACAGGTAACGATGGCTGCCGGACACGCAAGTGCCACAGGGCCCACTGTCACCCTAGTGCAGCTGCCCAATGGTCAGACAGTGCAGGTGCACGGAGTTATCCAGGCAGCTCAACCTTCAGTCATTCAGTCACCACAGGTGCAAACTGTCCAGATTTCCACAGTAGCGGAGAGTGAGGACTCACAGGAGTCAGTGGACAGCGTGACCGACTCTCAAAAACGAAGAGAGATCCTTTCTAGACGCCCCTCATATAGGAAAATCCTGAATGACCTGTCATCAGACGCTCCAGGAGTTCCGAGAATCGAAGAAGAGAAATCTGAGGAGGACACTGCGCCTGCCATCACTACAGTGACAGTGCCAACCCCAATATATCAGACCAGCAGCGGCCAGTACATCGCCATTACACAGGGTGGAGCCATTCAGCTTGCAAATAACGGCACAGATGGAGTGCAGGGATTGCAGACTCTCACCATGACGAATGCGGCAGCAGCCCAGCCAGGGACCACCATCCTGCAGTATGCCCAGACCAGTGATGGTCAGCAGATACTGGTGCCCAGCAATCAAGTAGTGGTACAAGCTGCTTCTGGAGATGTGCAGGCCTATCAAATTCGTACTGCCCCAACCAGCACTATTGCTCCAGGTGTGGTCATGGCATCCTCTCCGGCCCTGCCAAGCCAAGGAGGTGCTGAAGAGGCCACACGCAAAAGGGAAGTCCGCCTCATGAAAAACAGAGAGGCTGCTCGTGAGTGCCGTCGGAAGAAAAAGGAATATGTCAAGTGTCTGGAGAACCGTGTGGCCGTTTTGGAGAACCAGAACAAAACGCTCATCGAGGAACTCAAGGCACTCAAAGACCTATACTGTCACAAATCAGAGTGATGTACCACACGTTCTGGCGGACTTGCGTGTACAGAGACTAAAGGGCAAATCAGCCCGACACGGACGCATGTTTTCTAAATGTTTTCTTATTTTAAAATTGCTGCAGACTGCCTGTATGAACACACAAGTATGTGAGGGAACTGAACAGAAGCCCCCTGGCCAACACAAATCTCTTCTAGAAATATTGGATCATGTCATTATAGACAAAAAATGCTGAAAACTTTACTGTGGACATAAACACAGAAGCACGTTCTCAGCCATCTTTACTCCTGGACTCAAACCGAAACTCAGAGGAGGGGTTTGTAGGAAATTGTTTACCTTTTTTCCAGTGTGCTGTTGTATAAGTCGTCAATAACTTTTAAAAGAGTTACAAATAATGTAAAATAATAATAATAATTTAACTGACATTTCAATAGTATGGTAGACATCATTAAGAAAGATTTTCTCTTGGAGTTGGCATCATTCCCTCTTTAGATTCAAAAGGTTTAACGTATCTGACTGTTACTTTTATTTGGTGTATAGTGCTCTTGTGTTTTAAGTTGACGTTTTTTACATTTAATTATGAACAAACTATATACAAATATGAATATTGATTTACAGAATCTATGCCATTTATAAACTGAAATATTGTGTATCATACAGAACAAGATTATATCCCATGTACATTTCAATTTTGACGTTTTGCTCATTTCAGAAGACAAAAAATTTACCTAAATGATTTAATTGCTTAAAATCCTGCCTTTGCAGTAGCAACAGTTGCACAAACACAAA

Function

symbol description
creb1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Acts upstream of or within convergent extension involved in axis elongation; midbrain-hindbrain boundary development; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Is expressed in nervous system; presumptive neural retina; and proliferative region. Orthologous to human CREB1 (cAMP responsive element binding protein 1).
creb1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Orthologous to human CREB1 (cAMP responsive element binding protein 1).
creb1 Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; cAMP response element binding activity; and identical protein binding activity. Involved in negative regulation of transcription by competitive promoter binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II; protein phosphorylation; and response to organic substance. Located in euchromatin and nucleoplasm. Part of ATF4-CREB1 transcription factor complex. Biomarker of Pick's disease and schizophrenia.

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG:

id description
K05870 CREB1; cyclic AMP-responsive element-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_05761849_05767932.mRNA True 2768 mRNA 0.42 9 5760983 5768703

Neighbor

gene id symbol gene type direction distance location
CI01000009_05704310_05721474 KLF7, KLF7A, KLF7B coding upstream 38977 5703993 ~ 5722006 (+)
CI01000009_05696405_05703318 NA coding upstream 57062 5695671 ~ 5703921 (+)
CI01000009_05685508_05688628 NA coding upstream 72350 5685508 ~ 5688633 (+)
CI01000009_05538212_05539688 NA coding upstream 221295 5538212 ~ 5539727 (+)
CI01000009_05523743_05526184 NA coding upstream 234734 5523642 ~ 5526249 (+)
CI01000009_05772094_05781990 NA coding downstream 1920 5770623 ~ 5782227 (+)
CI01000009_05931829_05943829 KCNH3 coding downstream 163015 5931718 ~ 5943899 (+)
CI01000009_05968963_05974380 DBR1 coding downstream 198756 5967459 ~ 5974750 (+)
CI01000009_05983361_05989883 TBCCD1 coding downstream 214658 5983361 ~ 5990583 (+)
CI01000009_05992944_05994452 CRYGS, CRYGS1, CRYGS2 coding downstream 224241 5992944 ~ 5994492 (+)
G53637 NA non-coding upstream 14032 5746575 ~ 5746951 (+)
G53632 NA non-coding upstream 18517 5742252 ~ 5742466 (+)
G53584 NA non-coding upstream 178298 5582457 ~ 5582685 (+)
G53402 NA non-coding upstream 187117 5573634 ~ 5573866 (+)
G53396 NA non-coding upstream 205993 5554770 ~ 5554990 (+)
G53676 NA non-coding downstream 11881 5780584 ~ 5781118 (+)
G53646 NA non-coding downstream 75346 5844049 ~ 5845824 (+)
G53675 NA non-coding downstream 90494 5859197 ~ 5895612 (+)
G53723 NA non-coding downstream 267493 6036196 ~ 6036429 (+)
G53733 NA non-coding downstream 276818 6045521 ~ 6045723 (+)
G53388 NA other upstream 221929 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2551999 3202207 ~ 3208984 (+)
G51529 NA other upstream 2698396 3062033 ~ 3062587 (+)
G51274 NA other upstream 3410497 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3859557 1897343 ~ 1919516 (+)
G53651 NA other downstream 476861 6245564 ~ 6248392 (+)
G56100 NA other downstream 3360597 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4084656 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 5992083 11761606 ~ 11766944 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000713 creb1b,creb1,LOC107663917,LOC107551947 coding CM030137.1 CM030137.1 1432992 ~ 1447408 (+)