G53637


Basic Information

Item Value
gene id G53637
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5746575 ~ 5746951 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU61080
TAATAACAAGCACAAACTGTGTTAAATACAAATTGACGTGCAAGCAAAAAGGTTTCTGTCCTACGGTGTTTTTTCTACTTTACCACAGTAAAGAATGCGAATATAATAGGCCTAATTAAAAGCGAACCAAAGGAAGAAACGTTTATAATCCCCTGCGTGAGTGAAGATTTGGGAAAAGAAACAGAGATTCAATGTTCAGTGGAATTACTAATGGAATATTGTTAAATTCTCTGCTAATCGGGTGACCAGATCGCGATTCTTAAAACAGGATACAAAGCCGACAAAGCTTAAATGTATGGACTGACGTGCCTCTCTCATTCGGCATGAACCAAAATGTTTCCATGGCTGCGATGTCACATTTAATTGCTAACCTATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61080 True 377 lncRNA 0.37 1 5746575 5746951

Neighbor

gene id symbol gene type direction distance location
CI01000009_05704310_05721474 KLF7, KLF7A, KLF7B coding upstream 24569 5703993 ~ 5722006 (+)
CI01000009_05696405_05703318 NA coding upstream 42654 5695671 ~ 5703921 (+)
CI01000009_05685508_05688628 NA coding upstream 57942 5685508 ~ 5688633 (+)
CI01000009_05538212_05539688 NA coding upstream 206887 5538212 ~ 5539727 (+)
CI01000009_05523743_05526184 NA coding upstream 220326 5523642 ~ 5526249 (+)
CI01000009_05761849_05767932 CREB1, CREB1A, CREB1B coding downstream 14032 5760983 ~ 5768703 (+)
CI01000009_05772094_05781990 NA coding downstream 23672 5770623 ~ 5782227 (+)
CI01000009_05931829_05943829 KCNH3 coding downstream 184767 5931718 ~ 5943899 (+)
CI01000009_05968963_05974380 DBR1 coding downstream 220508 5967459 ~ 5974750 (+)
CI01000009_05983361_05989883 TBCCD1 coding downstream 236410 5983361 ~ 5990583 (+)
G53632 NA non-coding upstream 4109 5742252 ~ 5742466 (+)
G53584 NA non-coding upstream 163890 5582457 ~ 5582685 (+)
G53402 NA non-coding upstream 172709 5573634 ~ 5573866 (+)
G53396 NA non-coding upstream 191585 5554770 ~ 5554990 (+)
G53388 NA non-coding upstream 205937 5522242 ~ 5540638 (+)
G53676 NA non-coding downstream 33633 5780584 ~ 5781118 (+)
G53646 NA non-coding downstream 97098 5844049 ~ 5845824 (+)
G53675 NA non-coding downstream 112246 5859197 ~ 5895612 (+)
G53723 NA non-coding downstream 289245 6036196 ~ 6036429 (+)
G53733 NA non-coding downstream 298570 6045521 ~ 6045723 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2537591 3202207 ~ 3208984 (+)
G51529 NA other upstream 2683988 3062033 ~ 3062587 (+)
G51274 NA other upstream 3396089 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3845149 1897343 ~ 1919516 (+)
G53651 NA other downstream 498613 6245564 ~ 6248392 (+)
G56100 NA other downstream 3382349 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4106408 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 6013835 11761606 ~ 11766944 (+)

Expression


Co-expression Network