LOC111194270


Basic Information

Item Value
gene id LOC111194270
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 10221156 ~ 10225490 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111194270
ATGCTCCTATATGGTGTCAGTGGTGTGACTGTGGTGACCCAGAATCCCCCTGTTCTCACACCGACTAAAGGAGAGACCACCACTATGCACTGTAATCTGGGGACTGTTACTGGTTCCATCACTGACCCAGAGATCCACAGCACTGTGGTATTCGGCCCAGGAACAAAGCTGATCGTCACTGactctgctgctcctcctcctgTTCTGAGCATCTTCCCTCCGTCCAGTGAAGAGCTGAAGTCTAATAAAGCCACTCtagtgtgtgtggtcagtgacATGTCCACTGGTTATGCTGATGTTCGTTGGCTGCTGGACGGAAAGGCGGTCAGCAGTGGAGTGAGCACTGGCTCTGCAGAGCAGCAGCCCAATAAGAAGTTCAGACTGAGCAGCTATTTGAGCATTGAGAGATCAGAGTGGGAGAAAGATAAAGACATAACATGTGAAGTGTCTGCTGCCTCAAAAACTACAAGTAAAAGCATGAAGAAGTCTGAATGCATGGACTGAACCTGATCACATCTGTTCATCttcattcttttcttcttcttcagacGTACACTTCTTACTTGGCAGTGCTGAATAGAAACAGTAGTTTAGTGTGTAGTGAAAGAATGCTGATTCCAGCAACAAACACTGGATCATCTCCTGCTTACGTACTCCTTCATCTTTTCTCTTCTACAATAAAGTTGTTTGATGGATTTGAATAAAATGCAGAAGTGAAAAACTC
>TU12812
CTCTTCAAACATCATCTATCAGTTAATAATCAGTAATGTGGAGGTAGGAGACTCTGCAGTGTACTATTGTTATACATAGGATGGTTCTGCTAGTCAGGGCGTATCACAGTGATTGAGATCATGACAAAAACCTCCTCACTGCTCACATTCACTTCTCCATTTCATTCAGCACATTTCTCAGCTGCAGCAGGAAAGTGGGGTTAATAGGTGCAGTTCTCTTGAGCAGGACGTGTGAAGAAATCCCAGGAGAAGAGAGATGTGGAATTCCCAGAGACTGAAATGGGATGTGGAAGGACTCAGTGCTGATCATAGACAGTAGAAGAGAGAGCTGAAGTCTAGAGGACGTTTCAGTTCCGCTACTTTCACTTCTGAAACCAAGGAGGTTTTTGTACGGGTGAGGATATGAAATGAAGCACTGTGGTATTCGGCCCAGGAACAAAGCTGATCGTCACTGactctgctgctcctcctcctgTTCTGAGCATCTTCCCTCCGTCCAGTGAAGAGCTGAAGTCTAATAAAGCCACTCtagtgtgtgtggtcagtgacATGTCCACTGGTTATGCTGATGTTCGTTGGCTGCTGGACGGAAAGGCGGTCAGCAGTGGAGTGAGCACTGGCTCTGCAGAGCAGCAGCCCAATAAGAAGTTCAGACTGAGCAGCTATTTGAGCATTGAGAGATCAGAGTGGGAGAAAGATAAAGACATAACATGTGAAGTGTCTGCTGCCTCAAAAACTACAAGTAAAAGCATGAAGAAGTCTGAATGCATGGACTGAACCTGATCACATCTGTTCATCttcattcttttcttcttcttcagacGTACACTTCTTACTTGGCAGTGCTGAATAGAAACAGTAGTTTAGTGTGTAGTGAAAGAATGCTGATTCCAGCAACAAACACTGGATCATCTCCTGCTTACGTACTCCTTCATCTTTTCTCTTCTACAATAAAGTTGTTTGATGGATTTGAATAAAATGCAGAA
>TU12813
CTCTTCAAACATCATCTATCAGTTAATAATCAGTAATGTGGAGCACATTTCTCAGCTGCAGCAGGAAAGTGGGGTTAATAGGTGCAGTTCTCTTGAGCAGGACGTGTGAAGAAATCCCAGGAGAAGAGAGATGTGGAATTCCCAGAGACTGAAATGGGATGTGGAAGGACTCAGTGCTGATCATAGACAGTAGAAGAGAGAGCTGAAGTCTAGAGGACGTTTCAGTTCCGCTACTTTCACTTCTGAAACCAAGGAGGTTTTTGTACGGGTGAGGATATGAAATGAAGCACTGTGGTATTCGGCCCAGGAACAAAGCTGATCGTCACTGactctgctgctcctcctcctgTTCTGAGCATCTTCCCTCCGTCCAGTGAAGAGCTGAAGTCTAATAAAGCCACTCtagtgtgtgtggtcagtgacATGTCCACTGGTTATGCTGATGTTCGTTGGCTGCTGGACGGAAAGGCGGTCAGCAGTGGAGTGAGCACTGGCTCTGCAGAGCAGCAGCCCAATAAGAAGTTCAGACTGAGCAGCTATTTGAGCATTGAGAGATCAGAGTGGGAGAAAGATAAAGACATAACATGTGAAGTGTCTGCTGCCTCAAAAACTACAAGTAAAAGCATGAAGAAGTCTGAATGCATGGACTGAACCTGATCACATCTGTTCATCttcattcttttcttcttcttcagacGTACACTTCTTACTTGGCAGTGCTGAATAGAAACAGTAGTTTAGTGTGTAGTGAAAGAATGCTGATTCCAGCAACAAACACTGGATCATCTCCTGCTTACGTACTCCTTCATCTTTTCTCTTCTACAATAAAGTTGTTTGATGGATTTGAATAAAATGCAGAA
>TU12814
TGACCCCTCCCTCTGCCCCCTCCTGTCTCTCTTATAGCTCATCCCTGCACTCTCTCCTTTATCTGCTCCTCAAGCTGCTCATCTCTTCACTCAGCACAGAGAGCATCACACACTGACAAGATGCTGCCAGCACTCTGCACTCTCTTCACTGCTCTCTCATGTGTCAGTGGTGTGACTGTGGTGACCCAGAATCCCCCTGTTCTCACACCGACTAAAGGAGAGACCACCACTATGCACTGTAATCTGGGGACTGTTACTGGTAGCTCTGCTCGTTGGTATAAACAGGTTCCAGGAGGATTTCCACActgattggctgattacaGATTGACTCCTCCTCCCTCAGTTCCTTATGAaagctctctctcctctcttcatcCTCCACTCTGTTCATCACTCTGCTGATCACACAGACAACATGCTGCCCACCCTCTGTGTCCTCCTCCCTGCTCTGGCATGGGTCAGTTCACAGAAAGTTCTGACACAGACCCCTTCAGTTCTGACGGAGCAGCAGGGCAAGACCATCAGCATGGACTGTAACATCGCAAAGAATGAAGGATATA
>TU12815
TATGATTTTGTACAAATCTGATCTTGAGAACTTTAAATAAGATCTTATTATTGATGCACTGATTAGAATTATTGATCTTTACAGTGAACAAACTcacagctgattggctgattacaGATTGACTCCTCCTCCCTCAGTTCCTTATGAaagctctctctcctctcttcatcCTCCACTCTGTTCATCACTCTGCTGATCACACAGACAACATGCTGCCCACCCTCTGTGTCCTCCTCCCTGCTCTGGCATGGGTCAGTTCACAGAAAGTTCTGACACAGACCCCTTCAGTTCTGACGGAGCAGCAGGGCAAGACCATCAGCATGGACTGTAACATCGCAAAGAATGAAGGATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111194270 False 724 C_region 0.46 5 10221156 10225490
TU12812 True 986 lncRNA 0.44 2 10221167 10223359
TU12813 False 860 lncRNA 0.46 3 10221167 10223359
TU12814 False 560 lncRNA 0.33 4 10223481 10225462
TU12815 False 354 lncRNA 0.44 2 10223481 10223945

Neighbor

gene id symbol gene type direction distance location
LOC103027572 LOC105910934,LOC103366175,LOC102289484,LOC102197495,LOC101481562,LOC100706198 coding downstream 249042 9940770 ~ 9972114 (-)
tbl3 tbl3,LOC100195964 coding downstream 337368 9854473 ~ 9883788 (-)
tom1l2 tom1l2 coding downstream 420025 9761047 ~ 9801131 (-)
srebf1 srebf1 coding downstream 465065 9726681 ~ 9756091 (-)
LOC103023040 nptx2,nptx2a,LOC107724745,LOC107713953,LOC107665931,LOC107573982,LOC108275595 coding downstream 1130207 9076288 ~ 9090949 (-)
LOC103027763 LOC108432239,LOC107672452,LOC107711237 coding upstream 87870 10313360 ~ 10453819 (-)
LOC103028714 LOC108432238,LOC108277388,LOC106606311 coding upstream 233714 10459204 ~ 10466183 (-)
LOC107197110 LOC108432236,LOC108277373,LOC105898716 coding upstream 243707 10469197 ~ 10554323 (-)
LOC111193327 hs3st3a1,LOC108432232,LOC106589629,LOC107704231 coding upstream 913045 11138535 ~ 11165212 (-)
rnf222 rnf222 coding upstream 1069151 11294641 ~ 11296760 (-)
G9343 gid4,LOC107724729,LOC106601817,LOC107555661 non-coding downstream 388853 9822309 ~ 9832303 (-)
G9366 NA non-coding downstream 399142 9821178 ~ 9822014 (-)
G9358 NA non-coding downstream 411925 9808998 ~ 9809231 (-)
G9347 NA non-coding downstream 546678 9673966 ~ 9674478 (-)
G9287 NA non-coding downstream 655411 9565404 ~ 9565745 (-)
G9464 NA non-coding upstream 148479 10373969 ~ 10375655 (-)
G9465 NA non-coding upstream 152212 10377702 ~ 10378656 (-)
G9467 NA non-coding upstream 160520 10386010 ~ 10387292 (-)
G9468 NA non-coding upstream 162510 10388000 ~ 10389908 (-)
G9470 NA non-coding upstream 186652 10412142 ~ 10412628 (-)
G9350 rai1 other downstream 510755 9709792 ~ 9710401 (-)
G9285 NA other downstream 716693 9503908 ~ 9504463 (-)
cacng4 cacng4b,LOC108412836,LOC107691234,LOC107565862,LOC107713946,LOC108259704,LOC107548710 other downstream 1469095 8674912 ~ 8752061 (-)
LOC103040571 c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 other downstream 1800782 8379399 ~ 8420374 (-)
nags nags,LOC102299446 other downstream 1852688 8348110 ~ 8368468 (-)
G9469 NA other upstream 167972 10393462 ~ 10395480 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other upstream 1114650 11340140 ~ 11344262 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other upstream 1450664 11676154 ~ 11678108 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other upstream 2587535 12813025 ~ 12817186 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other upstream 2923867 13149357 ~ 13292878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01098551_00000076_00000589 NA coding CI01098551 null 76 ~ 1309 (+)