cops6 (cops6)


Basic Information

Item Value
gene id cops6
gene name cops6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34199102 ~ 34213128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676845.1
CCGCACTGAGTAAAGCAgcagcactgcgcatgcgcgtcTCTCAGGCGGAGAAGATGGCGACCGGCGGTGGGGTGATGGAGGTGGACGGAGCAGcgagTCCCAGTGTGATGGCCTCTGGAGTGACGGGCAGTGTGTCTGTGGCGCTGCATCCTCTCGTCATTTTGAACATCTCGGACCACTGGATCCGACTCCGCTCCCAGGAAGGCCGAGCCATGCAggtgattGGAGCTCTGATAGGGAAGCAGGAGGGGAGGAATATCGAGGTGATGAACTCGTTTGAGCTGCTGTTTCACACGACCGACGAGCGAATTCACATCGACAAGGAGTATTACTACACCAAGGAGGAGCAGtTTAAACAGGTATTTAAGGATATGGAGTTTCTTGGCTGGTATACGACGGGCGGTCCTCCCGACCAATCAGATATCCACATTCACAAACAGgtGTGTGAGATTATTGAGAGTCCGCTGTTTCTGAAGCTGAACCCGATGACCAAACACACCGATCTGCCTGTGAGTGTGTTCGAGTCTGTGATCGACATCATTAATGGAGAGGCAACCATGTTGTTTGCAGAGCTGACGTACACACTGGCGACGGAGGAGGCGGAGCGGATTGGTGTCGATCACGTGGCGCGGATGACTGCTACCGGCACCGGAGAGAACTCTAcagtggcgGAGCATTTGATAGCGCAGCACAGTGCTATAAAGATGCTGCACAGTCGGGTGAAGCTGATTCTGGAATATGTGAAGGCGGTTGAAGCAGgtgaggTCCCCTTTAATCATGAGATTCTGCGGGAGGCGAACGCTCTGTGTCACCGGTTGCCTGTACTGAGCACGCTCAAGTTCAAAACCGACTTTTACGATCAATGTAATGACGTGGGGCTGATGGCGTATCTGGGCACCATCACTAAAACCTGCAACAGCATGAACCAGTTCATCAACAAGTTCAACGTCCTGTACGACCGGCAGGGCATCGGCCGCCGCATGAGGGGCCTGTTCTTCTgatacacacttatatacactctctcacacacacacacacacacacacactcgcacacacacttaGTATCTGTTGTAAGTAAAAGACTCTggaaataaaagtaacattttggGAATA

Function

symbol description
cops6 Predicted to enable isopeptidase activity and metallopeptidase activity. Acts upstream of or within several processes, including central nervous system development; convergent extension; and cranial skeletal system development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS6 (COP9 signalosome subunit 6).

NR:

description
COP9 signalosome complex subunit 6

GO: NA

KEGG:

id description
K12179 COPS6, CSN6; COP9 signalosome complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676845.1 True 1115 mRNA 0.52 10 34199102 34213128

Neighbor

gene id symbol gene type direction distance location
evc NA coding upstream 7872 34172161 ~ 34191230 (+)
stk32b stk32b coding upstream 48534 34142179 ~ 34150568 (+)
msx1 msx1,msx1a,LOC107682425 coding upstream 73216 34120416 ~ 34125886 (+)
zbtb49 zbtb49 coding upstream 113573 34080543 ~ 34085529 (+)
slc2a9 slc2a9,LOC107569838 coding upstream 185755 33929204 ~ 34013347 (+)
stag3 NA coding downstream 17014 34230142 ~ 34247443 (+)
gpc2 gpc2 coding downstream 36745 34249873 ~ 34260056 (+)
G15421 NA non-coding upstream 5966 34160159 ~ 34193136 (+)
G15416 NA non-coding upstream 29539 34168194 ~ 34169563 (+)
G15430 NA non-coding upstream 31713 34163119 ~ 34167389 (+)
G15423 NA non-coding upstream 41111 34134616 ~ 34157991 (+)
G15426 NA non-coding upstream 45057 34153413 ~ 34154045 (+)
nsg1 LOC108431918 other upstream 77659 34023323 ~ 34121443 (+)
G15170 NA other upstream 1132544 33023236 ~ 33066558 (+)
G15160 NA other upstream 1274317 32921024 ~ 32924785 (+)
G14985 NA other upstream 2020504 32174401 ~ 32178598 (+)
smim13 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 other upstream 2154039 32041035 ~ 32045063 (+)
G15411 mcm7,LOC102777806,LOC107716516,LOC107744067,LOC107665623 other downstream 6815 34219943 ~ 34228038 (+)

Expression


Co-expression Network