G15170


Basic Information

Item Value
gene id G15170
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 33023236 ~ 33066558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20406
ATTTTGCACAGGGACATGATGACATATTAATATGGTGTAAAAATTAGTGATGTCACATCTCTGTGAGGTACACAGGTGAGTTCAGCTTCGTTtacatggattaaaaaaaacacattcctctttttttttagtgtgtagttTTGCAGCTTACACTTTCACTGGCATTCTCCCTGGGTCTGTGAGTGCTGTTCACCCCCAGATAAACActgacagagtgtgtgtgtgtcagtcggtgtgtctgtctgtctgtctatctgtctgtctgagagTGAGGATTCGTAGCTTATGTGTTCAAAACATCATTCATAATGAGAAGCCGTATTACTGTAtagcttctgtgtgtgtgtgtgtgtatgtgtgtgtgtgcgtgtaatCCATAGCACCAGCTACATCAAAGTGGAGTTAGCTTTAGCGTTCAGACGTAGCCTGCGGCCtgcattcataaacacagcGTGTTTACAGGAACCGTGAGCCTCCAGTCAAATAAACTtatatcagatcagatcagggCCAGATTCACACACACCCCACTTATAAAATCTTAAATATGGTTTTTAGCTTCCTTTCAGACTCGCTGTGAGGCgtttttataataaaagtaatggTTAAGTCATGAAACACAAGTGAAAAACTTATGCTAACGTGGCTAACAGTGATTGGAAATCAATGGTCTTAAACAGCATCGTTTAAAGCAAACCAGCAGGTTGTGGTGATTGTGTTgtcctcactcacaagataacacctcataacgtATACAGATTATACCTATGTTCCACACAATGGTAGGTAAGGATGGTGGCTGACAGCATCTGGTTAGatttgtccatgcaaacagagaCTAGTGACTAGCATAAATCCAGAtacacattcaatgcaggacaTCAAGATATTGGAcatagcaaaagtcatgggacaacatAATCAAGTCATGTCCCATGAATTTTGGAATATCAGTGTATATTCGTTAAATGTGTtgcttgataaaaaaataataatttgtatttacAGTAGTGGTGTAAAAGTGGTGTAATTCCACTTGCCATCTACAGGGGGAGCCGATGAGTAAAAGAGGCCAATTCCCACTTAATGCTGCATTAACTGCTGCTAACTGGTGACCGCTAGGTTGTATTAACTGctagtgttagcattagcatgtagcattagcatgctaTAATCTGATTAATGGTAATGGTAGTGTGCGATTTGGGACGCAGCCATTATTTTCAGTCTCTCAGATTCTCTTTTCACACGGATACTAAAGCCAAGCTAACATGGTTTTGACCTGACCATACctgtatacgttgtgaggtgttatcttgtgagtgaggttgactGAATgctggtcagtgtgctcatgatgcacagaaatcacatccacatttaatggtTGAGTGAGCATcacactgtgctctctctctctctctctccaaatgCTTATGAGACTCTTTTGGGGAAAACTGGGcttctgttattaaaaataataattcaagcCCTCAAAACCTGCTGACCAAATTGCTGTATATGCAAGCACTATGCAAATTTATGCAAATGATATGAAAATGTGGGGAATTTTTGTCACACGCCTGATTTATGGCCCGAACTGGACGCCTTGCTTTAATAGCCGCTAAAAATCAAAATGATAAACGCTCTAAATAtgtacacactatactacagctctggaaaaaaataagagagcacttaaaaattatgattttctttgattttaccaaacccgaaaacctctggaatataatcaagaggaagacgggtgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaatcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaaactgtgattaaaaaccaaccagggttattccaccaaatattgatttctgaactcttaaaactttatga
>TU20413
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggccgGGGCATGCTTCAGGAAGCGTGCTGAGACGGCGGAGGTCGATGGTCAGCGGTGGAGCTTCACCCACTGGGCTCCTGATCTTCCTTCCTTtgatctctgtgtttgtttatttgtttatctgtttgtttgtttgtttatctgttgtGAGGTCCGTCCCGCTGGCCGTACAGAGGTACTGGTATATATACAGGTTCTCCCGCCGGCTCGGCTCGGCCGCGCTACGCCGTCATTGGTTGGGCAGTTCGGGGGACGGCTTCTTTTTCAGAGTGTCTATGATGGACTGGACGCCGCGTTTGACGCTGGTGGTGACGCGGCGCGTGACCGAGTCCGGCGGGGGCGGAGACGAGGAACCTGCCTTCTGAGAGGGGGAGCGAGCCACCAGGCATTTCTGGTACCGGagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20406 True 1971 lncRNA 0.36 2 33033179 33066558
TU20413 False 480 TUCP 0.58 2 33023236 33036983

Neighbor

gene id symbol gene type direction distance location
LOC103034989 LOC108434520 coding upstream 30526 32989124 ~ 32992710 (+)
LOC103027883 ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC107676795,LOC100708886 coding upstream 41079 32974397 ~ 32982157 (+)
LOC103038530 NA coding upstream 49779 32964912 ~ 32973457 (+)
ints10 ints10 coding upstream 67948 32944699 ~ 32955288 (+)
slc16a2 slc16a2,LOC107731360,LOC107758472,LOC107552352,LOC108279893 coding upstream 117004 32877713 ~ 32906232 (+)
fgf2 fgf2 coding downstream 20240 33086798 ~ 33092311 (+)
spata5 spata5 coding downstream 35735 33102293 ~ 33167611 (+)
spry1 spry1 coding downstream 103552 33170110 ~ 33174821 (+)
fat4 fat4,LOC107717300,LOC107694441,LOC106604622 coding downstream 304020 33370578 ~ 33495147 (+)
hs3st1 hs3st1 coding downstream 804757 33871315 ~ 33875047 (+)
G15169 NA non-coding upstream 39853 32926582 ~ 32983383 (+)
G15166 NA non-coding upstream 52292 32903356 ~ 32970944 (+)
G15167 NA non-coding upstream 109675 32912229 ~ 32913561 (+)
G15162 NA non-coding upstream 111095 32897426 ~ 32912141 (+)
G15163 NA non-coding upstream 112279 32900452 ~ 32910957 (+)
G15194 NA non-coding downstream 8883 33075441 ~ 33096870 (+)
G15197 NA non-coding downstream 14498 33081056 ~ 33084299 (+)
G15328 NA non-coding downstream 149854 33216412 ~ 33216648 (+)
G15331 NA non-coding downstream 232103 33298661 ~ 33357837 (+)
G15362 NA non-coding downstream 434214 33500772 ~ 33501007 (+)
G15160 NA other upstream 98451 32921024 ~ 32924785 (+)
G14985 NA other upstream 844638 32174401 ~ 32178598 (+)
smim13 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 other upstream 978173 32041035 ~ 32045063 (+)
LOC103035097 fam193b other upstream 1845644 31161067 ~ 31177592 (+)
LOC103032125 NA other upstream 2251083 30739044 ~ 30772153 (+)
nsg1 LOC108431918 other downstream 956765 34023323 ~ 34121443 (+)
G15411 mcm7,LOC102777806,LOC107716516,LOC107744067,LOC107665623 other downstream 1153385 34219943 ~ 34228038 (+)

Expression


Co-expression Network