LOC103027883 (ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC107676795,LOC100708886)


Basic Information

Item Value
gene id LOC103027883
gene name ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC107676795,LOC100708886
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32974397 ~ 32982157 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676587.1
GCGCCCCCTAGCGCCGCTCCGCTCTCAGCGCCTCTCTGCTGTATTGTGTAACAGCGGGACTGATCGCACAGCTTTCACCCAAAACCCGCTAATAAATCCTCGCTGCGGAGTTCAGAACCGGAACCGGAGACCCGGACCGCGGGGGACACAGCGCAGATACCCGGAGAACAGGCAGCGAGGCCCGGGGGACGAGGAGGCGAGGACCCGCAGCTCCTCCGCGCAGCCGAGCGAGGCCCGACACCCACCGGGGGAGGAAGCGCCCTGGCCCGGCAGCAGCATGGCCAACATCGCGGTGCAGCGGATAAAACGGGAGTTTAAAGAAGTTCTGAAGAGTGAGGAGACGAgtaaaaatcagattaaagttgACCTGGTGGATGAAAACTTCACAGAACTGAAGGGGGAGATAGCAGGGCCGCCCGACACGCCTTATGAAGgtGGTAGATACCAGCTAGAAATTAAAATTCCAGAAACATATCCCTTCAATCCGCCAAAGGTACGATTTATTACGAAGATCTGGCATCCCAACATCAGCTCAGTAACGGGTGCCATATGTCTGGACATTTTAAAGGACCAGTGGGCAGCAGCGATGACGCTCCGGACGGTGTTACTGTCTCTACAAGCTCTACTGGCAGCCGCAGAACCAGACGACCCACAAGACGCTGTAGTGGCCAATCAGTATAAGCAGAACCCAGAGATGTTTAAGCAGACGGCTCGACTCTGGTCACATGTTTACGCAGGAGCTCCTGTCTCTAGTCCGGATTACACTCGCAAAATAGACAAACTCTGTGCCATGGGCTTCGATAAAAACGCAGTAATAGTGGCGTTGTCGTCGAAATCCTGGGACGTGGAGACGGCGACGGAGCTGTTGCTTAGCAACTGAGCCTGACCCAGGAAGCAGGAGCATCAGCACCCCCAGTTTAATGAATTTAACCCCCCAGACACCCCCACCCCTCCAACCCTCCCTCCCTTCTGACTGTCTGACCACATCAGAACCCACCTGGATTCAGTCCTTACATCAATAAACCTCACCACagcatctcacacacactcacacactgtctctatatcaccctgttcacacctggtatTATCCTGTATCCTGTGTGACAGCTctgaa

Function

symbol description
ube2kb Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be active in nucleus. Is expressed in lens. Orthologous to human UBE2K (ubiquitin conjugating enzyme E2 K).
ube2k Enables ubiquitin protein ligase binding activity and ubiquitin-ubiquitin ligase activity. Involved in several processes, including cellular response to interferon-beta; free ubiquitin chain polymerization; and positive regulation of cytokine-mediated signaling pathway. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 K-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K04649 HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676587.1 True 1117 mRNA 0.55 7 32974397 32982157

Neighbor

gene id symbol gene type direction distance location
LOC103038530 NA coding upstream 940 32964912 ~ 32973457 (+)
ints10 ints10 coding upstream 19109 32944699 ~ 32955288 (+)
slc16a2 slc16a2,LOC107731360,LOC107758472,LOC107552352,LOC108279893 coding upstream 68165 32877713 ~ 32906232 (+)
thegl NA coding upstream 165063 32801334 ~ 32809334 (+)
arl9 arl9,LOC107552351,LOC107729322,LOC107731368,LOC107662170 coding upstream 175510 32795318 ~ 32798887 (+)
LOC103034989 LOC108434520 coding downstream 6967 32989124 ~ 32992710 (+)
LOC103027667 NA coding downstream 14405 32996562 ~ 33032010 (+)
fgf2 fgf2 coding downstream 104641 33086798 ~ 33092311 (+)
spata5 spata5 coding downstream 120136 33102293 ~ 33167611 (+)
spry1 spry1 coding downstream 187953 33170110 ~ 33174821 (+)
G15166 NA non-coding upstream 3453 32903356 ~ 32970944 (+)
G15167 NA non-coding upstream 60836 32912229 ~ 32913561 (+)
G15162 NA non-coding upstream 62256 32897426 ~ 32912141 (+)
G15163 NA non-coding upstream 63440 32900452 ~ 32910957 (+)
G15141 NA non-coding upstream 132894 32822574 ~ 32841503 (+)
G15194 NA non-coding downstream 93284 33075441 ~ 33096870 (+)
G15197 NA non-coding downstream 98899 33081056 ~ 33084299 (+)
G15328 NA non-coding downstream 234255 33216412 ~ 33216648 (+)
G15331 NA non-coding downstream 316504 33298661 ~ 33357837 (+)
G15362 NA non-coding downstream 518615 33500772 ~ 33501007 (+)
G15160 NA other upstream 49612 32921024 ~ 32924785 (+)
G14985 NA other upstream 795799 32174401 ~ 32178598 (+)
smim13 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 other upstream 929334 32041035 ~ 32045063 (+)
LOC103035097 fam193b other upstream 1796805 31161067 ~ 31177592 (+)
LOC103032125 NA other upstream 2202244 30739044 ~ 30772153 (+)
G15170 NA other downstream 41079 33023236 ~ 33066558 (+)
nsg1 LOC108431918 other downstream 1041166 34023323 ~ 34121443 (+)
G15411 mcm7,LOC102777806,LOC107716516,LOC107744067,LOC107665623 other downstream 1237786 34219943 ~ 34228038 (+)

Expression


Co-expression Network