spata5 (spata5)


Basic Information

Item Value
gene id spata5
gene name spata5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 33102293 ~ 33167611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676611.1
GCGGCATGAGGGAGGAACACACATGCAGTTCAGATTTACCCAAAcattcatacactcatacacgcatttacacacttacacacactaatacacacactttaacaccGCTTTACACAGAGAAGAGCAGATCATGTCTTCAAAGAAGTCTAAAGCTAAAGGAAAGAGGGCTGAGGATGGAGAGATGAGTGTATTAGAGGGGTTAGACCCAGAAACTGTGAGTGTAACTGACTTTATAGAGAAAGCAGAAGAGAAAGCTCCTAAGCGATGCCGGTCATATCTCGCCCAACTGAGTTTAAACACGATGAAGAGTGTGAACGCCTGCATCGGCCGACCCGTCCTCATCACCAGCTCTACAGGACAGCAGGAGgtgtgtgtggcGTGGCCCGCTGCCCAGTTCCCTAGCAGGAAGGTGGGTCTGATGCCCGAGACCCAAATCAGCCTGGGAGTGAAGGGCGGAGCCACAGTTAGACTACAGCCAATCACAGGGGCCGTCCTGCAGGCGGAGGAGCTTCAGATCACCCTCAGAGATGAAGATGAGTGTATCAGTACTGAAGATTTCAGCAGCTTCCTCTTACGGACGTTAGacggCAGGATCCTCCTCCCTGGATGTTCTCTGACTGTGTCCTATTTCGGCCGTAAGTGTCCAATCAGGGTGGACGCTGTAAAGGGGGTGGACGGTGTCTCCCTCTGTCCCCTCACCCCTCTCTCGGACCCGTCCCTTCCGCCGTTACTGGACCCCTCTCCTCTGGATCTGTCTCTCCAGCTGGGTCAGCTGACCCTGAACCACTCATCGCCCCGCCCATCGCCCCGCCCATCCGCCAGCACGCCCAATCGACCTCAAGACTCCTCGCTCCTGACCTCGCCTCCTCTCTCCACTCCACATAAACTGGACAGCACGTCCGACAGGCCCCTCCCTCTCACGCCGGACACGCCCCTTCAGTCCGTGGAGTCTGAGGAGGAGCGGGACGCGTCCGGTTGTGCGGAtctggcgccccctgctgttcgctTTGGGAGCGACACCTTCTACTCCATCTGCTGCTCCACCCGGCTGAGCTTCACCCACTCGCAGCCGCAAACCACGGAGGACCAGGGTCAGGAGAGGTCAAAGGTCACCTACAGTATGATTGGTGGGCTGAGCGCTCAGCTGGCGGCGATCAGAGAAACCATTGAGCTTCCTCTGAAGCACCCGGAGATCTTCAGGAAGTACGGAATCCCGCCCCCTAGAGGAGTGCTGCTGTATGGGCCACCCGGCACAGGAAAGACCATGATTGGACGAGCAGTAGCCAATGAGGTGGGGGCGCACATGACCGTAATCAATGGGCCAGAGATCATGAGCAAgtTTTATGGTGAAACTGAAGCGCGTCTCCGCCAGATATTTGCAGAGGCTTCACAAAAGCAGCCTGCGATCATCTTTATTGATGAGTTGGACGCTCTGTGCCCGAAGAGAGAGGGAGCTCAGAACGAGGTGGAGAAACGAGTCGTCGCCTCTCTTCTCACGCTGATGGACGGAATCGGATCTGAAGGTCACAGTGGTCAGCTGCTGGTTCTGGGAGCCACTAATCGTCCTCACGCTCTGGACCCGGCCCTGCGGCGTCCGGGACGGTTCGATAAGGAGCTGGAGGTGGGCGTTCCTGCTGCGGAGGGGCGGATGGATATCCTGCAGAAGCAGCTGCGCTCCGTCCCCTGTGAGATCAGCACAGAGGAGCTGCAGGAACTAGCCGACGCGGCGCATGGATACGTAGGAGCGGACCTCGCTGCTGTCTGCAAGGAGGCCGGCCTTCATGCACTGAGGAGAGTTTTAGGCTCCGCCCCCGGCCTGTGTGACCCTGAGGTGATGGACAGAGTGAAGGTCACCGCCTCCGACCTCAGACTGGCCATGAAGCACGTCAAGCCCAGCGCCATGAGAGAAGTCGCTATCGATGTTCCTAAAGTGCGTTGGAGTGATGTTGGTGGTATGGAGGAtgtgaagctgaagctgaagcaGGCTGTAGAATGGCCCCTGAAGCACCCGGAGGCGTTCGCTCGGCTGGGCATTGCGCCCCCTAAAGGAGTGCTGCTGTACGGTCCGCCCGGCTGCTCCAAAACCATGATCGCTAAAGCGCTCGCTAACGAGAGCCAGCTCAACTTCCTCGCCATCAAGGGTCCAGAGTTACTGAGTAAATATGTGGGAGAGTCGGAGCGAGCCGTACGAGaggttttcCGGAAGGCGAGGACAGTCGCTCCCTCCATCGTGTTCTTTGATGAGATCGACGCTCTGGCTGTAGAGAGGGGCAGctCGTCCCGGTCCAGCGGTGTCGGTGATCGAGTGTTAGCTCAGCTGCTAACGGAGATGGACGGAATCGAGCAGCTTAAAGACGTCACGGTTCTCGCCGCCACCAACCGACCCGACATGATTGATAAGGCTCTGATGCGACCCGGGCGTCTGGACCGGATCGTGTACGTCCCTCTCCCGGACAGCGCCACCCGGAGGGAGATTTTCAGCCTGCAGTTCCGCAGCATGCCGGTCCACTCCAGCGTGCACCTGGACGACCTGGTGACCCGAACCGAGCGCTACTCGGGGGCAGAGATAACTGCAGTGTGTCGTGAAGCTGCACTCTTCGCCCTTCAGGAGGACATTAAAGCCGAGCACATCACCGACCGGCACTTTGACTCCGCCCTGTCTGCTATTAAACCACGAGTCCCAGAATCCCTCATTCAGACCTACATCTCctaccagcagcagcatcacGGCACCCGGCCCTTCTGCTGACGGGGAGGCCGAGGGGGCCAGCGCCCCCCAGTATAAAGACTCTTCTACCCCCTGTAGGATCTGAACTGATTAACTGATAATAAATGGAGCTGCTTTATTGTC

Function

symbol description
spata5 Orthologous to human SPATA5 (spermatogenesis associated 5).

NR:

description
spermatogenesis-associated protein 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K14575 AFG2, DRG1, SPATA5; AAA family ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676611.1 True 2851 mRNA 0.58 17 33102293 33167611

Neighbor

gene id symbol gene type direction distance location
fgf2 fgf2 coding upstream 9982 33086798 ~ 33092311 (+)
LOC103027667 NA coding upstream 70283 32996562 ~ 33032010 (+)
LOC103034989 LOC108434520 coding upstream 109583 32989124 ~ 32992710 (+)
LOC103027883 ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC107676795,LOC100708886 coding upstream 120136 32974397 ~ 32982157 (+)
LOC103038530 NA coding upstream 128836 32964912 ~ 32973457 (+)
spry1 spry1 coding downstream 2499 33170110 ~ 33174821 (+)
fat4 fat4,LOC107717300,LOC107694441,LOC106604622 coding downstream 202967 33370578 ~ 33495147 (+)
hs3st1 hs3st1 coding downstream 703704 33871315 ~ 33875047 (+)
LOC103021912 NA coding downstream 714138 33881749 ~ 33898984 (+)
wdr1 wdr1,LOC106565198,LOC106583413 coding downstream 742022 33909633 ~ 33924004 (+)
G15194 NA non-coding upstream 5423 33075441 ~ 33096870 (+)
G15197 NA non-coding upstream 17994 33081056 ~ 33084299 (+)
G15169 NA non-coding upstream 118910 32926582 ~ 32983383 (+)
G15166 NA non-coding upstream 131349 32903356 ~ 32970944 (+)
G15167 NA non-coding upstream 188732 32912229 ~ 32913561 (+)
G15328 NA non-coding downstream 48801 33216412 ~ 33216648 (+)
G15331 NA non-coding downstream 131050 33298661 ~ 33357837 (+)
G15362 NA non-coding downstream 333161 33500772 ~ 33501007 (+)
G15364 NA non-coding downstream 337598 33505209 ~ 33505643 (+)
G15365 NA non-coding downstream 361433 33529044 ~ 33529611 (+)
G15170 NA other upstream 35735 33023236 ~ 33066558 (+)
G15160 NA other upstream 177508 32921024 ~ 32924785 (+)
G14985 NA other upstream 923695 32174401 ~ 32178598 (+)
smim13 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 other upstream 1057230 32041035 ~ 32045063 (+)
LOC103035097 fam193b other upstream 1924701 31161067 ~ 31177592 (+)
nsg1 LOC108431918 other downstream 855712 34023323 ~ 34121443 (+)
G15411 mcm7,LOC102777806,LOC107716516,LOC107744067,LOC107665623 other downstream 1052332 34219943 ~ 34228038 (+)

Expression


Co-expression Network