wdr1 (wdr1,LOC106565198,LOC106583413)


Basic Information

Item Value
gene id wdr1
gene name wdr1,LOC106565198,LOC106583413
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 33909633 ~ 33924004 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676687.1
AAAGGCGCTCGCGGGGCGGAGGGGCGCGTGCACTTCCGCGAGGAGCGCTTGCTTATACACACGCAGCGCCGCGCGCTCTCTCCCGGTTTTCCGGTCTCTCCCCGTGTGTTTAGTTCTCTATTAATCAGGGTtcggttctggttctggttttgGTTCGGGTCCTGGTTCCGTGGATCAGCGCAGTCATCATGTCGCACGAGCTCAAGCGCGTGTTCGCCAGCCTTCCGCAGATGGAAAGGGGCGTGGCCAAGGTTCTGGGCGGAGACCCCAAGGGGAACAATTTCCTGTATACCAATGGGAAGAGTGTGATCATCAGGAACATTGATAACCCTGCTATCGCTGATATCTATACAGAACACCCTCACCAGGTGATCGTGGCGAAGTACGCCCCCAGTGGATTCTACATCGCTTCAGGAGATGTTTCTGGTAAGATCCGTATTTGGGACACGACCCAGAAGGAGCACCTGCTGAAGTACGAGTATCAGCCGTTCGGGGGGAAGATAAAGGACATTTCGTGGACGGAGGACAGTAAGCGCATCGCTGTGGTGGGAGAGGGACGAGAGAAGTTTGGCGCGGTGTTCCTGTGGGACAGCGGGTCGTCTGTGGGGGAGATCGTGGGTCACAGTAAGATTATTAACAGTGTGGATATTAAACAGACCCGGCCGTATCGACTCGTCACCGGCAGCGACGATAACTGCACCACCTTCCTTGAGGGACCGCCCTTCAAATTCAAATGCACCCTCAGCGATCACAGCCGGTTTGTGAACTGTGTGCGTTTCTCTCCGGATGGAAGCCGCTACGCGTCTGCAGGAGCAGACGGGcagATTTTCCTGTATGACGGGAAGACTGCAGATAAGCAGGGCACACTGGGCGGAGCTAAAGCCCATGAGGGCGGGATttatgctGTGTGCTGGAGCCCCGACAGCACTCAGCTCATCTCTGCGTCAGGTGATAAGACGGTGAAATTATGGGATGTGGCCACCGGCACCGCAGTAACCACCTTTAACCTGGGCTCAGATGTTCTGGATCAGCAGCTGGGCTGCCTCTGGCAGAAAGACCATCTCCTCAGCGTCTCTCTGTCCGGATACATCAACTACCTGGACAAGAACAGCCCCAACCGCCCCCTCCGGGTCATCAAGGGTCACAGCAAGTCCATCCAGTGTCTGACCGTCCACAAAGAGGACGGACGCTCCGTCATCTACTCCGGCAGCCACGACGGACACATCAATTACTGGGACGCTGAGACGGGGGAGAACGAGGAGATCTCAGGTAAGGGTCACTCTAACCTGGTGGCCAGGATGACCGTGGACGAGTCCAACCGGCTGGTGACCTGCAGCATGGACGACACCGTCCGCTACACCGACCTCAGCAAGAAGGAGTACAGTGCGTCTGATCTGGTGAAGATGGAGGTCCAGCCGAAGACCGTGTCGATTGGGCCGGGGGGCCTGGCTGTAGCCGTGTGTATAGGAcagGTGGTGCTGCTGAAGGATAAGAGGAAAGTTTTCACTCTGGATAATCTGGGCTACGAACCGGAGGCGGGAGCTGTTCACCCAGGGGGCGGGACTGTGGCTGTGGGCGGAGCTgaTGGGAAGGTGCGTATGTACTCGGTTCAGGGGAACACACTGAAGGATGATGGGAAGGTTCTGGAGGTGAAGGGTCCGGTGACGGATATGGAGTTCTCCCGGGACGGAGCGTTCCTCGCCGTCTCCGACGAGAAGAAGGTCATCACCGTCTTCACCGTCGCCGACGACTACGCGattaagaATGATTTCTACGGGCATCATGCTAAGGTGGTGTGTTTGTCCTGGTCTCCTGATAATGAACACTTCGCCTCCGGAGGGATGGACATGATGGTGTACGTGTGGACCGTCAACGACGCCGACAAGAGGATCAAAATTCCAGATTCTCACCGGTTGCACCACGTGAGCGGTTTGGCCTGGCTGGACGAACACACACTCGTCACGACGTCTCACGACGCGAGTGTTAAACAGTGGACTTTAAAAATCTAAAGCACATCAACACACACTcgcacttcacacacacacacacacacacactctcacggGATCAGCAGAGAGAGGGACTACTGTACTGTAgagcatccctctctctctctctctctctctctatctctctctctctctctctatctctctctatctgtctgtctgttttctaACTCTGTCCTGCAGGTGGCGCTGTCTGATTACAGTAAATCATGAATCACAGCTCTGGATTAAAGAGGAGATTCAGTAGATTTTCACTCTGATCTGCGTTTGCTGCGTCTGCATTAATAACATGAGCGAATTtccattaatatataaataaaaatattaaatataaaaaaataaatatatataccgTCACTCCTCCAGTACAGAGAGTCTGTATACGGACGctaaactgcacaaaataattcttctgtttttctgattttcacAAGAACcagctcatttgcatatctCATTAGCATATATCTGCCTACCTACTCAGCCTCGTCCgccctttaataataataataataataataataatctcccATTCGCTTCTATTAACCCGTTATAACCcagttttgtgtatgtgtgttgacTATTAGGTCCTGAGTTCAGGTAAAGGTGAAGGTCAttgaaggtcagtgaaggtcaCAGGTGGTACAGATGCAGCAGACGAAGGTCAGACTGGAGAACTCTGGATTAACCCTTTAAAGCTGGTCTGAGATCTGTCTCAGTGTAACACGGTTATAAATGATCTGAACATTCCCGAGGCCGGAGCCGGGTCTCCACCGCCAGCTCAGATCTGATCTGGGATCAGGTTCTGTAGAGATGCTCTGAGTGTTTCTCTCAACTCGATATAAATGGAGATGATCTGGAGTCAGACGCTGAAGCTCATTCCCACCACATCCCATAAACCCCTTCACCTCCTCACTGTTCAGTAACTCtgatttaattaaatcttaatgatcacatttaaagattttgatttattgtacttaatttttcatgttttttgcttGTGAAATAtcgaataaaacattttttgaacatGTATCATTAATAGTTACTATAGTTCCTTAATTTCTCAATTTGaccatttcatattttttattttgcagtcgccaaataataatagtactaatatgtttttagttttatttactgAAGGAAAATCTTTGCTATTTTTCCTCAAATGAGAAATGTGTCAAAATAACTTATTCatagtgttaaaaataaaaagatcaaacaacttaatgttaaaaatgagcaattctttaatttaaattcaAACTATTTATTCAAAAAATTCTGTTTGcctttttacttaaataaaggtCTTTAAATGTCAGAAATTTGCCTTATTAacctgaaaaaatgaaaaacagcagAGTGAGAATGAGCTTCTTGACGGTTCTACAGGTGGAGGGTCAGCTTTGGTCTCTCttactcttattctctctctctcttctctctctctctctctctctctctctctctctctctctctctctggtggaTCATGTGTGGTTCTGTCGGGAGTGGTAATAAAGGGTTAATCTGATGAGCATCAGGTGGTAAAGGGTTAATATGATGCTGTGTTGTGTGTCGGTTCTGGTTCTGTTTGATTTTGTTGTTTTCGATGCTCCACTTTTGTTCTGTTTGGGTGGACGTGAGTCGTAatgatattaattaataatggaaataaaagcGAACACTTTTTATGCAAA

Function

symbol description
wdr1 Is expressed in ectoderm; epidermis; nervous system; and solid lens vesicle. Orthologous to human WDR1 (WD repeat domain 1).

NR:

description
PREDICTED: WD repeat-containing protein 1

GO: NA

KEGG:

id description
K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676687.1 True 3721 mRNA 0.48 15 33909633 33924004

Neighbor

gene id symbol gene type direction distance location
LOC103021912 NA coding upstream 10649 33881749 ~ 33898984 (+)
hs3st1 hs3st1 coding upstream 34586 33871315 ~ 33875047 (+)
fat4 fat4,LOC107717300,LOC107694441,LOC106604622 coding upstream 414486 33370578 ~ 33495147 (+)
spry1 spry1 coding upstream 734812 33170110 ~ 33174821 (+)
spata5 spata5 coding upstream 742022 33102293 ~ 33167611 (+)
slc2a9 slc2a9,LOC107569838 coding downstream 5200 33929204 ~ 34013347 (+)
zbtb49 zbtb49 coding downstream 156539 34080543 ~ 34085529 (+)
msx1 msx1,msx1a,LOC107682425 coding downstream 196412 34120416 ~ 34125886 (+)
stk32b stk32b coding downstream 218175 34142179 ~ 34150568 (+)
evc NA coding downstream 248157 34172161 ~ 34191230 (+)
G15390 NA non-coding upstream 21622 33883776 ~ 33888011 (+)
G15373 NA non-coding upstream 113495 33795798 ~ 33796138 (+)
G15372 NA non-coding upstream 296106 33613279 ~ 33613527 (+)
G15371 NA non-coding upstream 305455 33603952 ~ 33604178 (+)
G15370 NA non-coding upstream 305914 33603439 ~ 33603719 (+)
G15407 tmem128 non-coding downstream 133807 34057811 ~ 34065029 (+)
G15396 NA non-coding downstream 147906 34071910 ~ 34078310 (+)
G15423 NA non-coding downstream 210612 34134616 ~ 34157991 (+)
G15426 NA non-coding downstream 229409 34153413 ~ 34154045 (+)
G15421 NA non-coding downstream 236155 34160159 ~ 34193136 (+)
G15170 NA other upstream 843075 33023236 ~ 33066558 (+)
G15160 NA other upstream 984848 32921024 ~ 32924785 (+)
G14985 NA other upstream 1731035 32174401 ~ 32178598 (+)
smim13 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 other upstream 1864570 32041035 ~ 32045063 (+)
LOC103035097 fam193b other upstream 2732041 31161067 ~ 31177592 (+)
nsg1 LOC108431918 other downstream 99319 34023323 ~ 34121443 (+)
G15411 mcm7,LOC102777806,LOC107716516,LOC107744067,LOC107665623 other downstream 295939 34219943 ~ 34228038 (+)

Expression


Co-expression Network