G208029 (ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837)


Basic Information

Item Value
gene id G208029
gene name ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26134586 ~ 26155268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282365
AATCATTAGGGGTGACCAAACTTTTGCACAAGACTGTGAAACCAACCAaagctgaaaaaagaaaactgatcTTTAGACTCTTATTTTGAGTGATCTGTTCTGCCTCAAAAGTAAAAAACTGAATCTGAAACTCTTCTTCTTTCTATTTCTTGCATTAATAACACATTTCATGTCTGTACTGTACCTGAAATGTACTTTTGAGGTCCCCAGATTGAACAGattacttttctgcattaaaggCCCCTGATGATTTAACATTTCCACAGAAAGACTCCCAGTCTTCCACTTGACAGTTGCTGACTGTTTGCAGTAGGAGGGGCCTCCTCCACCTCGGAGGGGTCCTACTCTCAGGCACCCCATGTTTGGAGAGCTCTAATCCAGCTTTCCAGTCTGGTTAGTACTGCTCAGTCTCAGCAGCCAGGTGGCCCATTCACGCTGGAGGCCACCACAGGGGGGTCGAGGGCATACAGAAACGGCCGGCCAGCCACAAAGAGCTGGACGTCCAATCGCTGCTACTGAAAAGATTGGCGCCAAACCCCAGAGGCTCACAAAGAGCAGCCAGTGCAGGAGCGCTGATCTAAGACCAGAGATTTCTGCCTAGTTATGATGATCAACCATCATAAGAGCTGGTCTGAGAGCAGCGCAGTCCCCCTGAGGGAGATGCTTTGTTCCAGATGGAGGCCCCTCGAATAGCAAAAGCCCCCAAAATATACACTCCCACGTCACATTCGGACTGTTCTCTGAAACTTCTTCATCTCTGAGCGAGCGGCCCTGCCCACTTCCCTCAAAACACAAGAGAGCTTCCCGCCATTCTCAACACTGTCTGCTCTCGGTCttttacttacacacacacacacaaataccatCAACATACTGTACTACAgtgatattatacagtatagtaATCAACCCTGCCCTGAAGCACTAACAAAAAGTTTTCCACTACAGCAACTGACGGAGTGATACACTAAGTCTGAAGTTGTGCTTCTTATTCTTCTGGGCATCCCTGGTCACCATTTCATTCTCAGATTACagaagtagaaagtagaaaagtAACTGGGGTCTGATTCACTAAAAAAAGGTCTAAAGAAAGAACTATGTCTTAGTTGTTTTTAGAAGCTAAGGTACACTATcttatctaaaatataattctCCTCCTTTCCAATCCCAGGAGAAAGAGCAGGAAGAATAGAGAAAAGGAACAGTAATTAGAGAAATGAACCAGCTGATCCTTTTTAATAGGGTGGTGACTActgatgaactgagccaatcacaatgctCAATTTCAGCTCACCCTACTACTACCCCAGCCAATCGTAGCTGCTGCATATGGCCATACTTTTGTATGTGTTAATTGTGGATGGATAAAGACAAACTCCTGCTTCTTGCTCTGAACTCCTGCTTCTATAtacatagctctggaaaaaaaataagagacaacataaaaatgacgagttttgattttacctaattgaaataATCAACAGGAAGgtataaagttacccaaaagcagtgtgtaaggctggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaccagggttattccaccaaatattgatttcggaactcttaaaactttatgatgggAACTAgttttcttgcattatttggcgtctgaaagctctgcatattttttaaatgtcagccatttctcattttctgcaaataaatgctctaaatgacaatatataacaataaacaataaatagtttagaatagaatacaacaacaatgttcattttactcaaacatatacctataaatagtaaaatcaaagaaactgattcagaaactcgagtggtctcttttttcttatttccagagctgtatgtatagaTATCTCTTTCATTACACCACAAATCTCATATTTTCCCTAATAAAAGATTGTTTATTGATATTTCTGTTGGCCATATCTTCCACTATCACCGTTTTAGCACTGGATATTTGTATCCTGAACTCGATTCAGTTTTTTCCtcagtttttacatttaagaaTGTCTTCAGAATGAGATTCATTTGGTGAACCGTATCTTTAATATTAGCTACTGTGCTTCTTGTAATAAACTCACATGTACACAAGTACATGTTATTTAGTAATAACTGCGAAACcctacactttaaaaaaaagctgctaCTGTGGTCCCCTCACATCACAACCAGCAACACTATGGGCTGTAGCACCCTCTACTGCTGAACAAGGGGAGGTCCCATCCTAACCTGTGcttgatgataaaaaaaaaaaaaaaactgtatcaacatgaaaaaaaaacagctgtttatataatattataaagaaTATTATAAATGCATAGATGAAGCGGTTACAGATGGTGAAGTGTCAACTCTGAACCAGTAACTGCAATGTGTCAATGTGCAATTTATATCTATTTAAAGAACACCAATTTTCTATAgcaaaaataaagtgttaataCTTTCTTGCGTAGTCATGGGGCTACTCATATTGTTTCAACatgaaatatatacattatatactatAGACATAAACCAGGAAGGGGGAGGACACAATATTGGAAACACCAAAACAGTATAAGGATATATTAGTAACAAAGTGTTACAAGGAAAAGCAGCGTAGACATGTTTTTATACCTGTCCTGGGACATTTACTTTGCATTTAAGGACTGGATTAGAGCATATTTCAGCTACTGTTTAgtgcacatactgtatatttgcaGCAGAACTTTAACTATATCAGAATTCTGATACTGATACTAAGTATAACATCGCAACAGTACTCAAATTGTATTTGttctttaataataacaataataagagatttttattattattgttatttgtattgatagtattactactaatactactattattattattactactgagCATCTCTAATCCCTCATTACATAAAGAGGTTTGTTTTAATCTTTCAAGAATAACCATTAGTATATTGGTAAACttccaaaatattaaaaagaaaatgagtgTACCGTTTATCTTTTGGTCAGTTCAAAATATGATGTTTCCAGTATTGTGCCCAAAAATAACTGCATCTGCTTtctgtattaaaaattataattcaCATCTTAATTGTGTGcttaaacacatttcaaaaagttctaaaaaaaaatctaattggtcaaaaacaattataaatcTTTTTATAATCTCAGTTAATAAAGGTCTGTGAAACTAACTGTACAGtctaaagtttaaaatgaggggtgtcacTGGGGCACGTCCCCTGGGTGAGCATCCTGGAGGAAGGGGACAAATGATGAGCGGACCGTGCGTCCCTTAAGAGGCTGCTGAACACGGAAGTTGTTCACCATGCTCTTCTGAACATCCTCTTCAGCTGAAGTGAAGAGCAAGCTTCGAAACACAGccagTGATCATGGCTGACTTCTATGGGCTGCTTCATGATGATCCATGTGACTGCCTCGGTCAGCGGGGGCGTGGTCAGAGAGCCGGCGTACGTCCAGTAGTCCTGCGTGTTCTCAGGCAGGAGACCGGAAGCGTCAAACCGAGTGAACTCCACCACACTGTCTTGTGTCGAACAGCAGGTAAAGCGTCCACCAACTTCTGCAGTCCCTCGTGCCGCTTTCCAACCTTAAGGAAGACTCCAATGACAGCCAAGCCATTGTCCTCCATGACTGCTTCCTCAAACAGGCTGTACCTATCAGCGTTCCAGTGTACCAGGTGGAGCTCAGCTGGGTAGAGAAGATGGTCCACAGTGTGTTCAGCACCCCACTTGTTATTCTCTCCCCAGTGGAAATGAAACTGGCACAGCCTGAACTGATCCTCCAGTGGACCCCCTTGCAGTGTCGACTTGTCTGTGGTGTCGTCATACTCGACTAGAAAAGAGTAACCGTTATTCCAGATTTGCTGGCAGGTTCTGGGGTCGTACTTCATAACGAGAGGTTTGAGCTGAGGGTCAAACATGCTTTTCCGCACAGAGATGTCGATGGGAGACTGGCGCTCTCCTCCCGGGATGGCCAGCGGCTCCTGCCACATCGGGTGCATCTGTGAGAGGACGTATCTGCTGGAGCAGGCGGACAGGTTGCATCTCCGGaccggctgctgctgctgctgtaaccGGATCCTCCCGGCCAGGCGACGCTGGAGCTGCCGCCCGAGGGGCGCTAGAACCGCGGCTAGGATCACCATAGCTCCGCTGCAACACTAACAGAACACAGACCGAGAAGTTAAATCGATGGAAAGCGGGTGTTCCTGGATGATTGTCGTGTTTGGTCCTGAACACGGACTTGAATGCACATGTAAATCGA
>TU282366
GGGCACAGCATCAGGATCAGCCAGCATAGTTCTACAGGACAGATTTAGAAACAATGGTCACGCAGAAATTAATACGAATTATTTTTGTCAACGAAAAAGGCATAGAAATTGTAAGTTTGAAATTTAGTTAGTTCTTCAGGTtggaatagaaaatatatgcaATTGTCAAAGTCTTACAGAATGAACAGAGCTTTACATTATTTCCTGGATAAATCAATACAATTAGgagttaaataaatagaagtatATCTTACTCGACTTGTCTGTGGTGTCGTCATACTCGACTAGAAAAGAGTAACCGTTATTCCAGATTTGCTGGCAGGTTCTGGGGTCGTACTTCATAACGAGAGGTTTGAGCTGAGGGTCAAACATGCTTTTCCGCACAGAGATGTCGATGGGAGACTGGCGCTCTCCTCCCGGGATGGCCAGCGGCTCCTGCCACATCGGGTGCATCTGTGAGAGGACGTATCTGCTGGAGCAGGCGGACAGGTTGCATCTCCGGaccggctgctgctgctgctgtaaccGGATCCTCCCGGCCAGGCGACGCTGGAGCTGCCGCCCGAGGGGCGCTAGAACCGCGGCTAGGATCACCATAGCTCCGCTGCAACACTAACAGAACACAGACCGAGAAGTTAAATCGATGGAAAGCGGGTGTTCCTGGATGATTGTCGTGTTTGGTCCTGAACACGGACTTGAATGCACATGTAAATCGA
>TU282367
AATCATTAGGGGTGACCAAACTTTTGCACAAGACTGTGAAACCAACCAaagctgaaaaaagaaaactgatcTTTAGACTCTTATTTTGAGTGATCTGTTCTGCCTCAAAAGTAAAAAACTGAATCTGAAACTCTTCTTCTTTCTATTTCTTGCATTAATAACACATTTCATGTCTGTACTGTACCTGAAATGTACTTTTGAGGTCCCCAGATTGAACAGattacttttctgcattaaaggCCCCTGATGATTTTCCCTTTGTATCTTACTGGAGGTGGACAGTTGCTGACTGTTTGCAGTAGGAGGGGCCTCCTCCACCTCGGAGGGGTCCTACTCTCAGGCACCCCATGTTTGGAGAGCTCTAATCCAGCTTTCCAGTCTGGTTAGTACTGCTCAGTCTCAGCAGCCAGGTGGCCCATTCACGCTGGAGGCCACCACAGGGGGGTCGAGGGCATACAGAAACGGCCGGCCAGCCACAAAGAGCTGGACGTCCAATCGCTGCTACTGAAAAGATTGGCGCCAAACCCCAGAGGCTCACAAAGAGCAGCCAGTGCAGGAGCGCTGATCTAAGACCAGAGATTTCTGCCTAGTTATGATGATCAACCATCATAAGAGCTGGTCTGAGAGCAGCGCAGTCCCCCTGAGGGAGATGCTTTGTTCCAGATGGAGGCCCCTCGAATAGCAAAAGCCCCCAAAATATACACTCCCACGTCACATTCGGACTGTTCTCTGAAACTTCTTCATCTCTGAGCGAGCGGCCCTGCCCACTTCCCTCAAAACACAAGAGAGCTTCCCGCCATTCTCAACACTGTCTGCTCTCGGTCttttacttacacacacacacacaaataccatCAACATACTGTACTACAgtgatattatacagtatagtaATCAACCCTGCCCTGAAGCACTAACAAAAAGTTTTCCACTACAGCAACTGACGGAGTGATACACTAAGTCTGAAGTTGTGCTTCTTATTCTTCTGGGCATCCCTGGTCACCATTTCATTCTCAGATTACagaagtagaaagtagaaaagtAACTGGGGTCTGATTCACTAAAAAAAGGTCTAAAGAAAGAACTATGTCTTAGTTGTTTTTAGAAGCTAAGGTACACTATcttatctaaaatataattctCCTCCTTTCCAATCCCAGGAGAAAGAGCAGGAAGAATAGAGAAAAGGAACAGTAATTAGAGAAATGAACCAGCTGATCCTTTTTAATAGGGTGGTGACTActgatgaactgagccaatcacaatgctCAATTTCAGCTCACCCTACTACTACCCCAGCCAATCGTAGCTGCTGCATATGGCCATACTTTTGTATGTGTTAATTGTGGATGGATAAAGACAAACTCCTGCTTCTTGCTCTGAACTCCTGCTTCTATAtacatagctctggaaaaaaaataagagacaacataaaaatgacgagttttgattttacctaattgaaataATCAACAGGAAGgtataaagttacccaaaagcagtgtgtaaggctggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaccagggttattccaccaaatattgatttcggaactcttaaaactttatgatgggAACTAgttttcttgcattatttggcgtctgaaagctctgcatattttttaaatgtcagccatttctcattttctgcaaataaatgctctaaatgacaatatataacaataaacaataaatagtttagaatagaatacaacaacaatgttcattttactcaaacatatacctataaatagtaaaatcaaagaaactgattcagaaactcgagtggtctcttttttcttatttccagagctgtatgtatagaTATCTCTTTCATTACACCACAAATCTCATATTTTCCCTAATAAAAGATTGTTTATTGATATTTCTGTTGGCCATATCTTCCACTATCACCGTTTTAGCACTGGATATTTGTATCCTGAACTCGATTCAGTTTTTTCCtcagtttttacatttaagaaTGTCTTCAGAATGAGATTCATTTGGTGAACCGTATCTTTAATATTAGCTACTGTGCTTCTTGTAATAAACTCACATGTACACAAGTACATGTTATTTAGTAATAACTGCGAAACcctacactttaaaaaaaagctgctaCTGTGGTCCCCTCACATCACAACCAGCAACACTATGGGCTGTAGCACCCTCTACTGCTGAACAAGGGGAGGTCCCATCCTAACCTGTGcttgatgataaaaaaaaaaaaaaaactgtatcaacatgaaaaaaaaacagctgtttatataatattataaagaaTATTATAAATGCATAGATGAAGCGGTTACAGATGGTGAAGTGTCAACTCTGAACCAGTAACTGCAATGTGTCAATGTGCAATTTATATCTATTTAAAGAACACCAATTTTCTATAgcaaaaataaagtgttaataCTTTCTTGCGTAGTCATGGGGCTACTCATATTGTTTCAACatgaaatatatacattatatactatAGACATAAACCAGGAAGGGGGAGGACACAATATTGGAAACACCAAAACAGTATAAGGATATATTAGTAACAAAGTGTTACAAGGAAAAGCAGCGTAGACATGTTTTTATACCTGTCCTGGGACATTTACTTTGCATTTAAGGACTGGATTAGAGCATATTTCAGCTACTGTTTAgtgcacatactgtatatttgcaGCAGAACTTTAACTATATCAGAATTCTGATACTGATACTAAGTATAACATCGCAACAGTACTCAAATTGTATTTGttctttaataataacaataataagagatttttattattattgttatttgtattgatagtattactactaatactactattattattattactactgagCATCTCTAATCCCTCATTACATAAAGAGGTTTGTTTTAATCTTTCAAGAATAACCATTAGTATATTGGTAAACttccaaaatattaaaaagaaaatgagtgTACCGTTTATCTTTTGGTCAGTTCAAAATATGATGTTTCCAGTATTGTGCCCAAAAATAACTGCATCTGCTTtctgtattaaaaattataattcaCATCTTAATTGTGTGcttaaacacatttcaaaaagttctaaaaaaaaatctaattggtcaaaaacaattataaatcTTTTTATAATCTCAGTTAATAAAGGTCTGTGAAACTAACTGTACAGtctaaagtttaaaatgaggggtgtcacTGGGGCACGTCCCCTGGGTGAGCATCCTGGAGGAAGGGGACAAATGATGAGCGGACCGTGCGTCCCTTAAGAGGCTGCTGAACACGGAAGTTGTTCACCATGCTCTTCTGAACATCCTCTTCAGCTGAAGTGAAGAGCAAGCTTCGAAACACAGccagTGATCATGGCTGACTTCTATGGGCTGCTTCATGATGATCCATGTGACTGCCTCGGTCAGCGGGGGCGTGGTCAGAGAGCCGGCGTACGTCCAGTAGTCCTGCGTGTTCTCAGGCAGGAGACCGGAAGCGTCAAACCGAGTGAACTCCACCACACTGTCTTGTGTCGAACAGCAGGTAAAGCGTCCACCAACTTCTGCAGTCCCTCGTGCCGCTTTCCAACCTTAAGGAAGACTCCAATGACAGCCAAGCCATTGTCCTCCATGACTGCTTCCTCAAACAGGCTGTACCTATCAGCGTTCCAGTGTACCAGGTGGAGCTCAGCTGGGTAGAGAAGATGGTCCACAGTGTGTTCAGCACCCCACTTGTTATTCTCTCCCCAGTGGAAATGAAACTGGCACAGCCTGAACTGATCCTCCAGTGGACCCCCTTGCAGTGTCGACTTGTCTGTGGTGTCGTCATACTCGACTAGAAAAGAGTAACCGTTATTCCAGATTTGCTGGCAGGTTCTGGGGTCGTACTTCATAACGAGAGGTTTGAGCTGAGGGTCAAACATGCTTTTCCGCACAGAGATGTCGATGGGAGACTGGCGCTCTCCTCCCGGGATGGCCAGCGGCTCCTGCCACATCGGGTGCACTAAGACAAGAAAGACAAAGTCCACATCGT

Function

symbol description
ca5a Predicted to enable carbonate dehydratase activity. Acts upstream of or within ion homeostasis. Predicted to be active in mitochondrion. Is expressed in axial vasculature; brain; endocrine pancreas; pancreas; and posterior pancreatic bud. Orthologous to several human genes including CA5B (carbonic anhydrase 5B).

NR:

description
PREDICTED: carbonic anhydrase 5A, mitochondrial isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282365 True 4299 lncRNA 0.41 10 26134586 26155268
TU282366 False 716 lncRNA 0.47 2 26134586 26141484
TU282367 False 4054 lncRNA 0.40 9 26141003 26155268

Neighbor

gene id symbol gene type direction distance location
LOC111195834 NA coding downstream 34759 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 39395 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 448975 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 562315 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 682495 25412186 ~ 25452091 (-)
LOC111195836 NA coding upstream 88980 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 458594 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 518338 26673606 ~ 26715253 (-)
kitlg NA coding upstream 637494 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 791026 26946294 ~ 26949370 (-)
G208027 uba2 non-coding downstream 9818 26123347 ~ 26124768 (-)
G208026 uba2,LOC107701803 non-coding downstream 12219 26121477 ~ 26122367 (-)
G208022 NA non-coding downstream 34763 26091811 ~ 26099823 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding downstream 57940 26061311 ~ 26076646 (-)
G208011 NA non-coding downstream 119583 26014747 ~ 26015003 (-)
G208042 NA non-coding upstream 8647 26163915 ~ 26169806 (-)
G208047 NA non-coding upstream 59631 26214899 ~ 26215110 (-)
G208048 NA non-coding upstream 60185 26215453 ~ 26215729 (-)
G208070 NA non-coding upstream 125179 26280447 ~ 26281036 (-)
G208307 NA non-coding upstream 206818 26362086 ~ 26362363 (-)
LOC111195835 NA other downstream 16954 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 46171 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 48082 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 142092 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 196554 25919220 ~ 25938032 (-)
G208046 NA other upstream 56790 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 500175 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 2061127 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2506915 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2627815 28783083 ~ 28860774 (-)

Expression


Co-expression Network