G208487


Basic Information

Item Value
gene id G208487
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 27008167 ~ 27011112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282924
aaatcatagtgtatATAGATAAAtgagaattaaaagaaaaaacgttATAATACTGGTATAGAACTTGTCCAAGTGAGGATTTCTAAATAAAGAACTAAGTCATTTTAAGTCTACGAAGCCAGTTCTTATTTCCAACCAAGCAACTCATAAGGAATTGTCTATACTAAAGGGAGATCTACGAAGGACTCGACCAAACCATGACCATCTGGACCGTAGGCTTCTGGGTTGGATCTGGCGGGTCTCTATTAAGCTGTACTTAGCTAAGTTTGGTAAGCATAATGCATGGCTTTGTAGATCGTAACATAGCTTTAGATTTAGGAATAGCATTCATGGAATTACGTTATAAATACCATCTCATATTCGCAGTCCTGTCTTCGTCCAAGTGATATGCCATTGTTGGTCCACCACTATTGTGCACAGTTCCAGATAGTTATCATTAAAGGTCTTAAATCCCAGGTTTATGACTGAAAGAGGCTGGAGGAATGCCAAAAGATTGTTTACCCAAAACTTGCATTTAGGGCTCTTGAGAGAAGCTGaagtgaagaaatagtcaggaAATGTCATTTGAAATTAAGGGTTGTTTGGGGAAAAATTAGTGCATCCTGGAGGGGATTGTGAAGTTAGAAAATTCCTTTAGACCATAAAGTGAggggtaatgtgtgtgtgtccaagtgATGAAGAAAACCTCCAGTTAATCCACTAAACAAATgtctagcaacacctttgccACCATCGAATATatgatagcaaccacctagcaagcgattaacaacaccttagcaaccacctagaacaccttagcaactgcctagcaacacctcaacAACCACCAGTAATAACATTGCAACTTAGCAATCATCACAGATAtgacagcaaccacctaacaacaccttagcaacaacctggaacattttagcaaccacatggaatatgatagcaactgcttagcaacataaTAGCACCCACCTAGCAATCATTTaacaacaacttagcaactacctagaaacaccttagctacCACTTTGAGTATGATAACTTGCAAaatcatagcaactgcctagcaacacctgagcaaatACAACATACAAcctgcctagcaacaacttaacaACACTTTAGCAATCACCTGGAAAACTTTTGCAACttcctagcaacatcttagtaaccacttcagaaatgttagcaactgcttagcaacctaTATatgatagcaaccaccttagcaatcacATGGAATATGCCTAGCaaaacattagcaaccaccacagatatgATAGCAACCATTTAACAAGAAATAAGCAACCACATTAGATATGAtggcaactgcttagcaaccaattagcaacaccttagcaacctcttGAAATACCttagcagctgcctagcaacaccttagagaCCCCCTAAAATTTGGTAGTAaatgcctagcaacaccttagcaatgacCACAGATAGGATAGCAAAAGTGGGATATTTTGACATATCAACTGTGTTTTACACTGTGTGTCTAGGTTTACtcacacatttgtaaatacaagttattgttaaaaaatgtcTTCGAACTTGTCTTGATGACCTTAAATTGGGTCTTGTTGCAGACAGAGTTTGAAGGTAAATAATTACCAAATGCTGACATCTTAAACAGTATGGATGcctacacaggaaatttggcagtgttaaatcaacactgttagtgttaaatccacacttattagtgttaaactttacactctcagtgttgatttaacactaacagtgttaatttaacactgccaaatttcctgtgtaatAATCCTTCTGTGTCAGAGACAATTTTACTTCTGTAGCTATAACCTTTAAAGGCTCTTTAAatagccactaaaccctaattCATATTTTAGGGTTCATGTGTTCcgttgaagtaataaaacataccagacctgcttaaacattttttaaacctttcattttttaaatttaaattaaatcttaaattaaaaaaaaaaaaaaatttataacgGTACAGTACAGCCTTGGTATTTCACCTGGTGAATCTCACTGTTCCTATAAGCTGTGGCCGTACTTAGTTTTTCCAAAAAGACAGCGGGGATACCTGCCCGCACCTGCTGCCGGAAATGAGTgagagtgggtgagtgagtgagaggtaaTTTTCTGTGACacatttactgctttatttcttAGCATTCATATCTGAAGTATAATCCTATCTTTATCCAGTGTGAGttatccatgtgtgtgtgtttatatataaatagatacaGATGGTGGTGGAGAAAATCTCCCACTTCAAATGACTTCTCAGTCGCAAAAGTGCTAGTGGACTCGGTATCACTATCCATGTTCTAAACTAACCAAAGTACCACTcccattttttgcattttttaaaactgagCCAAAGGTGGAGTCAGCtgaaatcagggggtttagtggcCCTTTAAGAACCCCTACCAAGCTCAAAAGACtattttacatatgttttacaaACCTAAATGGATAGAAGTTTTTGGTCCTATCAAAATGTAAGACTGGCATACGGCATGTGAAATTGAAGATGCCAAATTTtgtgcaaattaaaaaaaaaaaacagtggccACCACTATCACTCActcaatatgtaaaaaaaaaatctaatctttctctttttatctgcTAGGACATTAATTCATATCTGAGTTGTTTTTgattgttctttttaaaaagcaggTTTCTGTATACCTGCTGTTTCACAAACACATATTGTAATTACTCAGACTGTCTTGTAACTGTATGAATcgtacaaataaaataaaatacaaataca

Function

GO:

id name namespace
GO:0015085 calcium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282924 True 2800 lncRNA 0.37 3 27008167 27011112

Neighbor

gene id symbol gene type direction distance location
LOC111195857 NA coding downstream 54694 26951689 ~ 26953473 (-)
LOC111195856 NA coding downstream 58797 26946294 ~ 26949370 (-)
kitlg NA coding downstream 192708 26792762 ~ 26815459 (-)
cep290 cep290 coding downstream 292914 26673606 ~ 26715253 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding downstream 367944 26613862 ~ 26640223 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding upstream 15382 27026494 ~ 27233590 (-)
LOC111195765 NA coding upstream 97187 27108299 ~ 27111038 (-)
LOC111195771 NA coding upstream 134924 27146036 ~ 27152300 (-)
tmem231 tmem231 coding upstream 1145655 28156767 ~ 28163353 (-)
adat1 NA coding upstream 1166028 28177140 ~ 28193065 (-)
G208481 NA non-coding downstream 16239 26991493 ~ 26991928 (-)
LOC111195768 NA non-coding downstream 51717 26954767 ~ 26956450 (-)
LOC111195769 NA non-coding downstream 56843 26950914 ~ 26951324 (-)
G208455 NA non-coding downstream 114117 26885476 ~ 26894050 (-)
G208448 NA non-coding downstream 115910 26883504 ~ 26892257 (-)
G208518 NA non-coding upstream 154064 27165176 ~ 27181579 (-)
G208519 NA non-coding upstream 157666 27168778 ~ 27170164 (-)
G208520 NA non-coding upstream 159641 27170753 ~ 27174391 (-)
G208521 NA non-coding upstream 160051 27171163 ~ 27173252 (-)
G208527 NA non-coding upstream 195698 27206810 ~ 27207649 (-)
G208394 borcs5,LOC107753635 other downstream 351983 26655443 ~ 26656184 (-)
G208046 NA other downstream 795326 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 890535 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 919752 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 921663 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1205283 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1651071 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1771971 28783083 ~ 28860774 (-)
G209090 NA other upstream 3012849 30023961 ~ 30024550 (-)
G209127 NA other upstream 3151345 30162457 ~ 30162973 (-)

Expression


Co-expression Network