G51960


Basic Information

Item Value
gene id G51960
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1094548 ~ 1095267 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59216
AAAACTTCGTTTAACTCTTCTATTGTTTGGTACAGAATAAACAAAAGATGACTTCATTTGTCCAGCTGTGTAGGAGAAGATCTCCCTGAAGGCAAAGTCTTGGACACATCCAGGTGTAATGGCAGCAAACCCATAAAGTGTGCCAAGACATTTCTCCCTCGCTTCTAAACTTTAGCACAGGCGGACAAAGTGTCTTTCACAAAGAGAGGGGGTAGAAAAGAAAGGGTGCCAAACTACACGAGGCAGGGCCAAGCGTTGTATCAAGCAGGAGGAATGACTGATGGAAAGATAAGGGACAAAACCAAAGAGAGCAGACCAAACAGGAAAAGCAGGCAAGCAGCAAATGGAGGGGTGTAGCCTGGGTCGACACAGAGCGTATGGTGGACGCTCACGTTGCATGTATCTGCTTTTGTTTAGTGCAGACAAGAAAGCACTTTTTTTTTTCTATCTCATAAAAACATTCCGGTAACTTTTCTCTTTGTGGTGCATATAAAAACATTTCTAACTAGCATGTATCTAGTAACAAAATCACTCAAGCATAACAAATATATAACCTATTTAAAATTAAACCAAGAATGTGGA
>TU59215
TCAAAATATTGAAAACTGACATTCGATCAACTCTTCTGAATAACAGTTCTAACTGACATGCATCTAGTAAGCAATTCCACATTATAAATAAATTATATTTGTAAGATTTTGTCACGATATTTTATCACAATAATATTGAAAACTTCGTTTAACTCTTCTATTGTTTGGTACAGAATAAACAAAAGATGACTTCATTTGTCCAGCTGTGTAGGAGAAGATCTCCCTGAAGGCAAAGTCTTGGACACATCCAGGTGTAATGGCAGCAAACCCATAAAGTGTGCCAAGACATTTCTCCCTCGCTTCTAAACTTTAGCACAGGCGGACAAAGTGTCTTTCACAAAGAGAGGGGGTAGAAAAGAAAGGGTGCCAAACTACACGAGGCAGGGCCAAGCGTTGTATCAAGCAGGAGGAATGACTGATGGAAAGATAAGGGACAAAACCAAAGAGAGCAGACCAAACAGGAAAAGCAGGCAAGCAGCAAATGGAGGGGTGTAGCCTGGGTCGACACAGAGCGTATGGTGGACGCTCACGTTGCATGTATCTGCTTTTGTTTAGTGCAGACAAGA

Function

NR:

description
PREDICTED: zinc finger protein GLIS1, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU59216 False 582 lncRNA 0.30 1 1094548 1095129
TU59215 True 566 lncRNA 0.35 1 1094702 1095267

Neighbor

gene id symbol gene type direction distance location
CI01000009_01061214_01063408 KLF5, KLF5B coding downstream 31140 1060175 ~ 1063408 (-)
CI01000009_01039363_01051161 NA coding downstream 42993 1037813 ~ 1051555 (-)
CI01000009_01018746_01020434 NA coding downstream 74063 1018157 ~ 1020485 (-)
CI01000009_00995615_01005713 NA coding downstream 88105 995224 ~ 1006443 (-)
CI01000009_00981620_00988912 NA coding downstream 105496 981355 ~ 989052 (-)
CI01000009_01112860_01113252 NA coding upstream 17345 1112612 ~ 1113252 (-)
CI01000009_01121956_01122628 NA coding upstream 25920 1121187 ~ 1125787 (-)
CI01000009_01128947_01131135 NA coding upstream 33617 1128884 ~ 1131161 (-)
CI01000009_01138569_01164523 NA coding upstream 42982 1138249 ~ 1164537 (-)
CI01000009_01208525_01212914 NA coding upstream 113107 1208374 ~ 1214517 (-)
G52009 NA non-coding downstream 10966 1083319 ~ 1083582 (-)
G51949 NA non-coding downstream 39123 1012830 ~ 1055425 (-)
G51991 NA non-coding downstream 115379 978934 ~ 979169 (-)
G51982 NA non-coding downstream 128076 965889 ~ 966472 (-)
G51909 NA non-coding downstream 278151 816021 ~ 816397 (-)
G51959 NA non-coding upstream 2959 1098226 ~ 1102385 (-)
G51970 NA non-coding upstream 8321 1103588 ~ 1104490 (-)
G51958 NA non-coding upstream 10563 1105830 ~ 1110232 (-)
G51957 NA non-coding upstream 135861 1231128 ~ 1233278 (-)
G52082 NA non-coding upstream 138785 1234052 ~ 1234740 (-)
G52098 NA other upstream 306665 1401932 ~ 1407627 (-)
G52410 NA other upstream 1456457 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1788421 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 2165936 3261038 ~ 3262843 (-)

Expression


Co-expression Network