RNA id: TU59216


Basic Information

Item Value
RNA id TU59216
length 582
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G51960
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1094548 ~ 1095267 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACTTCGTTTAACTCTTCTATTGTTTGGTACAGAATAAACAAAAGATGACTTCATTTGTCCAGCTGTGTAGGAGAAGATCTCCCTGAAGGCAAAGTCTTGGACACATCCAGGTGTAATGGCAGCAAACCCATAAAGTGTGCCAAGACATTTCTCCCTCGCTTCTAAACTTTAGCACAGGCGGACAAAGTGTCTTTCACAAAGAGAGGGGGTAGAAAAGAAAGGGTGCCAAACTACACGAGGCAGGGCCAAGCGTTGTATCAAGCAGGAGGAATGACTGATGGAAAGATAAGGGACAAAACCAAAGAGAGCAGACCAAACAGGAAAAGCAGGCAAGCAGCAAATGGAGGGGTGTAGCCTGGGTCGACACAGAGCGTATGGTGGACGCTCACGTTGCATGTATCTGCTTTTGTTTAGTGCAGACAAGAAAGCACTTTTTTTTTTCTATCTCATAAAAACATTCCGGTAACTTTTCTCTTTGTGGTGCATATAAAAACATTTCTAACTAGCATGTATCTAGTAACAAAATCACTCAAGCATAACAAATATATAACCTATTTAAAATTAAACCAAGAATGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59266 lncRNA downstream 10966 1083319 ~ 1083582 (-) True G52009
TU59194 lncRNA downstream 39123 1012830 ~ 1055425 (-) True G51949
TU59248 lncRNA downstream 115379 978934 ~ 979169 (-) True G51991
TU59239 lncRNA downstream 128076 965889 ~ 966472 (-) True G51982
TU59146 lncRNA downstream 278151 816021 ~ 816397 (-) True G51909
TU59214 lncRNA upstream 3097 1098226 ~ 1102385 (-) True G51959
TU59227 lncRNA upstream 8459 1103588 ~ 1104490 (-) True G51970
TU59211 lncRNA upstream 10701 1105830 ~ 1110232 (-) False G51958
TU59212 lncRNA upstream 10701 1105830 ~ 1110232 (-) False G51958
TU59213 lncRNA upstream 11173 1106302 ~ 1110232 (-) True G51958
CI01000009_01061214_01063408.mRNA mRNA downstream 31140 1060175 ~ 1063408 (-) True CI01000009_01061214_01063408
CI01000009_01039363_01051161.mRNA mRNA downstream 42993 1037813 ~ 1051555 (-) True CI01000009_01039363_01051161
CI01000009_01018746_01020434.mRNA mRNA downstream 74063 1018157 ~ 1020485 (-) True CI01000009_01018746_01020434
CI01000009_00995615_01005713.mRNA mRNA downstream 88105 995224 ~ 1006443 (-) True CI01000009_00995615_01005713
CI01000009_00981620_00988912.mRNA mRNA downstream 105496 981355 ~ 989052 (-) True CI01000009_00981620_00988912
CI01000009_01112860_01113252.mRNA mRNA upstream 17483 1112612 ~ 1113252 (-) True CI01000009_01112860_01113252
CI01000009_01121956_01122628.mRNA mRNA upstream 26058 1121187 ~ 1125787 (-) True CI01000009_01121956_01122628
CI01000009_01128947_01131135.mRNA mRNA upstream 33755 1128884 ~ 1131161 (-) True CI01000009_01128947_01131135
CI01000009_01138569_01164523.mRNA mRNA upstream 43120 1138249 ~ 1164537 (-) True CI01000009_01138569_01164523
CI01000009_01208525_01212914.mRNA mRNA upstream 113245 1208374 ~ 1214517 (-) True CI01000009_01208525_01212914
TU59360 other upstream 306803 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 1142394 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 1142394 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 1142394 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 1142609 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075382 False 1252 lncRNA 0.44 4 NC_007120.7 30865653 ~ 30890495 (-)