LOC111192404


Basic Information

Item Value
gene id LOC111192404
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 11440412 ~ 11442668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48291
TCCCAAAACCTAGGGAGCTCTCTACATAGACAGCATCATTGGATGCGCGTTCCCGAGAAGTAGgctgtcccaattcttagataCCTTAAAATGCTGTCTACTAAGATACCTTATTCTTACCCTGTAATAAGAGAGCATTAGACCCTTCCTCAGCCGGTAaggcaatcccatgatgcaGCGCGGGGCAGCACAGCGTAGCTCAACTTCTTCCATCATGGCGGACGGAAGTGGATCGGCCAGCGCCgaagtcatttttaaatGACTGTTCTTCTGGAATTGGGGCTTGCGGACAAAGTAAAAGAAATGGgacaacttaaaaaataaatacaatgtaaGTTCAAAGATGAAGCTGAAATTGTGTAgaataatttatgtattttattgatttttatgtaTTGATttgag
>XR_002649902.1
TCCCGAGAAGTAGgctgtcccaattcttagataCCTTAAAATGCTGTCTACTAAGATACCTTATTCTTACCCTGTAATAAGAGAGCATTAGACCCTTCCTCAGCCGGTAaggcaatcccatgatgcaGCGCGGGGCAGCACAGCGTAGCTCAACTTCTTCCATCATGGCGGACGGAAGTGGATCGGCCAGCGCCgaagtcatttttaaatGACTGTTCTTCTGGAATTGGGGCTTGCGGACAAAGTAAAAGAAATGGgacaacttaaaaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48291 True 405 lncRNA 0.42 2 11440412 11442668
XR_002649902.1 False 275 lncRNA 0.46 2 11440462 11442588

Neighbor

gene id symbol gene type direction distance location
ptpre ptpre,LOC103359937,LOC107387775 coding upstream 223040 11184890 ~ 11217372 (+)
foxi2 foxi2 coding upstream 397519 11040698 ~ 11042893 (+)
trim65 trim65 coding upstream 954614 10476390 ~ 10485798 (+)
LOC103039374 NA coding upstream 998474 10437323 ~ 10441938 (+)
cdc42ep4 NA coding upstream 1016167 10385012 ~ 10424245 (+)
glrx3 glrx3,LOC107745700 coding downstream 630695 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 1161289 12603957 ~ 12664928 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding downstream 1228877 12671545 ~ 12692068 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding downstream 1261670 12704338 ~ 12710368 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding downstream 1274985 12717653 ~ 12831319 (+)
G35834 NA non-coding upstream 175432 11156376 ~ 11264980 (+)
LOC103033033 NA non-coding upstream 176026 11090292 ~ 11264386 (+)
G35832 NA non-coding upstream 240228 11114649 ~ 11200184 (+)
G35833 NA non-coding upstream 280600 11153899 ~ 11159812 (+)
G35825 NA non-coding upstream 360969 11078872 ~ 11079443 (+)
G35908 NA non-coding downstream 379224 11821892 ~ 11822308 (+)
G35912 NA non-coding downstream 406864 11849532 ~ 11849748 (+)
G35913 NA non-coding downstream 408456 11851124 ~ 11851340 (+)
G35931 NA non-coding downstream 627527 12070195 ~ 12072400 (+)
G35971 NA non-coding downstream 1017106 12459774 ~ 12461856 (+)
dock1 dock1,LOC107740868 other upstream 438607 10747637 ~ 11001805 (+)
G35744 mrpl38 other upstream 964629 10471380 ~ 10475783 (+)
LOC103024481 adamts14,LOC103367006 other upstream 2589020 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 2967423 8442132 ~ 8472989 (+)
fasn fasn other upstream 3001547 8386173 ~ 8438865 (+)
G35903 NA other downstream 358790 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 669022 12111690 ~ 12566941 (+)
G35967 NA other downstream 923872 12366540 ~ 12370962 (+)
G35995 NA other downstream 1259637 12702305 ~ 12703056 (+)
LOC103039668 LOC108435045 other downstream 2059578 13502246 ~ 13520702 (+)

Expression


Co-expression Network