G37592


Basic Information

Item Value
gene id G37592
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18589222 ~ 18641095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50683
ggtcacatgacatcactagcgttcagtagctcctccatttccactcgctgttgtgttttttttacatggatctccgtggaaacccaaagtgtaattacggtgcacgcCAGttgacaaatagctattttattaaatgtgaggagactaaaattactggaggaccttgcagttcagagaaaaacagtagataattcagcctgtaattttctcagaggacgtccggacacaaataaaattacagaggataaaaaaaacccataaaagagaaaattaccccagaacccctgagaaactaatcccatccggatagggcttatgtCTCTGTttactctcttacacacacacactgctcgcttcagatatttttgtaatatctattttattttctatcatCTGTTcactaaacaaagaaacagtgAATATTTGTGAATGTTGTTTCAGTGATTATGATGATAATGTTTGTTTTGGTGCACAAgaatgtctgtctctctctttcctttttccacgtttaaatataattaaaagtatattttatatttctcttAGTGATTTTTATGATCAGTTCGGTTCAGTTTGTAAGTATGACCTCCTCCAGTAGGAGGCAGCATCGCCTCAATGACTAAATGAAGGGTGAAGAGAAGTGCGGTTGAAACCACAGTGCAATAAAGAAATGCATGTCTTGCACAGCGAGTAGCAGAACTCTGCCAGTCTTTGCCGACTTCACACAAACTCACTTGAACTCAGATCATTAGCAGCACTTTGTTTTTGCTTGAATGTGTATAATTGTTATTATATAGATCATAATCACTTTATAACTGAATCATTTTGGGCTGACTGATCAAAGCTCTTGGACTCTACTGGTGCTTCTCCATTAACTTTGCCTATTTTTCATcaaaaattgattaaaatatgGATGATAAAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50683 True 926 lncRNA 0.37 2 18589222 18641095

Neighbor

gene id symbol gene type direction distance location
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding upstream 5441 18533534 ~ 18583781 (+)
LOC103021514 NA coding upstream 59267 18518908 ~ 18529955 (+)
LOC103034039 LOC108441161 coding upstream 140019 18420193 ~ 18449203 (+)
LOC103032559 LOC108441169 coding upstream 245761 18332474 ~ 18343461 (+)
LOC103030877 NA coding upstream 375018 18200351 ~ 18214204 (+)
LOC103035226 rab5c,LOC103035226,LOC108431395,LOC108274320 coding downstream 67890 18708985 ~ 18716376 (+)
LOC103023065 LOC108431394,LOC107590592 coding downstream 84797 18725892 ~ 18806982 (+)
LOC103035736 dnajc7,LOC103035736,LOC105007721,LOC108431365,LOC100706534,LOC101467049,LOC102783216,LOC105919562,LOC106589259,LOC106607285 coding downstream 173677 18814772 ~ 18827717 (+)
LOC103023371 LOC108431393,LOC103369716 coding downstream 188872 18829967 ~ 18865676 (+)
klhl11 klhl11,LOC107551837,LOC107694394,LOC107556757,LOC107674689 coding downstream 228051 18869146 ~ 18878812 (+)
G37557 NA non-coding upstream 116649 18470159 ~ 18472573 (+)
G37534 NA non-coding upstream 202570 18386414 ~ 18386652 (+)
G37501 LOC108441156 non-coding upstream 271270 18313306 ~ 18317952 (+)
G37492 LOC108441156,LOC108274106 non-coding upstream 299836 18286903 ~ 18289386 (+)
LOC111192384 NA non-coding upstream 335450 18232596 ~ 18253772 (+)
G37652 NA non-coding downstream 171644 18812739 ~ 18812951 (+)
LOC111192409 NA non-coding downstream 322142 18963237 ~ 18964036 (+)
G37735 NA non-coding downstream 573473 19214568 ~ 19214818 (+)
G37751 NA non-coding downstream 701004 19342099 ~ 19342794 (+)
G37767 NA non-coding downstream 833527 19474622 ~ 19476578 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 212877 18371378 ~ 18376345 (+)
G37404 NA other upstream 475296 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 489243 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 618223 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 628918 17952580 ~ 17960304 (+)
LOC103022762 NA other downstream 4540 18645635 ~ 18707728 (+)
G37749 NA other downstream 688273 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 839961 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 847804 19488899 ~ 19511441 (+)
G37943 NA other downstream 1514633 20155728 ~ 20158339 (+)

Expression


Co-expression Network