G37767


Basic Information

Item Value
gene id G37767
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19474622 ~ 19476578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50938
CTGAATGCACTGAAGACAGAACCTGCAGCAGAACCGGAGCACTTTCCCTCACCAGTACCGGCTGAGTGGACACAGCAGCCAGCGCCGCCACACACCGCTGCCGAACAGCTCCCCTACACTGACCCTGCGATGGAGCGGCGTCATCTGATTTTTCTGAGAATATTTCCTCCTTCAGTCGTGGAACCATCCGGGAGGTGAAAGCTGCAGGATGGAGACGGGACAGTGATCCCGCACACTCCACCACTGCCAAACTAACTTGagcatcctcctcctccagaaCTAGTCTggtcatatgatccacaacctTCTCCACCTCCGACTCTGCTAGCAGGCCAGGCTGCTGCCCCATAGTGGCGAGAACTTTGGTAGCAGTGATTTGGAGGCCTGCACTCGACTCAGCCAGAGCAGAAAACACAGCACTGCATAGAGACACCTGAAAGGGCAGCAGCACACTCTCC

Function

GO: NA

KEGG:

id description
ko00531 Glycosaminoglycan degradation
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU50938 True 458 lncRNA 0.56 4 19474622 19476578

Neighbor

gene id symbol gene type direction distance location
LOC103038698 zdhhc16,zdhhc16b,LOC108444288,LOC108273908,LOC107602426 coding upstream 19269 19436361 ~ 19455353 (+)
fam20a fam20a coding upstream 55870 19391442 ~ 19418752 (+)
LOC103044175 NA coding upstream 88768 19361821 ~ 19385854 (+)
dcxr dcxr coding upstream 145799 19317712 ~ 19328823 (+)
rfng rfng,LOC106610281 coding upstream 163479 19293604 ~ 19311143 (+)
LOC103040580 mapk8b,mapk8,LOC108437314,LOC107709004,LOC106962379,LOC106579004,LOC103040580,LOC108274025,LOC107720002,LOC107388204,LOC107653969,LOC101073575 coding downstream 232087 19708665 ~ 19734677 (+)
LOC103042203 NA coding downstream 363728 19840306 ~ 19849320 (+)
LOC103045523 LOC108437318 coding downstream 817661 20294239 ~ 20299561 (+)
LOC103030679 LOC108437319 coding downstream 1213088 20689666 ~ 20691726 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding downstream 1225682 20702260 ~ 20708857 (+)
G37751 NA non-coding upstream 131828 19342099 ~ 19342794 (+)
G37735 NA non-coding upstream 259804 19214568 ~ 19214818 (+)
LOC111192409 NA non-coding upstream 510586 18963237 ~ 18964036 (+)
G37652 NA non-coding upstream 661671 18812739 ~ 18812951 (+)
G37592 NA non-coding upstream 833527 18589222 ~ 18641095 (+)
G37862 NA non-coding downstream 180927 19657505 ~ 19658477 (+)
G37861 NA non-coding downstream 226670 19703248 ~ 19739691 (+)
G37882 NA non-coding downstream 264291 19740869 ~ 19741119 (+)
G37930 NA non-coding downstream 413937 19890515 ~ 19963972 (+)
G37935 NA non-coding downstream 529334 20005912 ~ 20006127 (+)
G37749 NA other upstream 142961 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 766894 18645635 ~ 18707728 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 1098277 18371378 ~ 18376345 (+)
G37404 NA other upstream 1360696 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 1374643 18063983 ~ 18099979 (+)
G37812 mms19,LOC106578995 other downstream 4478 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 12321 19488899 ~ 19511441 (+)
G37943 NA other downstream 679150 20155728 ~ 20158339 (+)
G38079 kif22,LOC107664627 other downstream 1542591 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 1632502 21109080 ~ 21128764 (+)

Expression


Co-expression Network