G37945


Basic Information

Item Value
gene id G37945
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20099119 ~ 20099850 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU51177
ttcactgttcagagatcagtattttctaaatttagcacttttaatactgctggagcagtattattagagttagatgctaatcgctaaacgttcaccgttcagaggtgagttatcggcctgtaatctgcttgtttaccgtgttaaaacaagctacgggggacgaatcgctagctaatatctcactgtcttaccagaacacgcaggattactcagtgtaacgctgtcgtttaagtttgggttaactttactagtttaggtgactagctagcgtgctagcggatagctatgctaacgctggtgcagcaagccttagtggacatctggaaatctaagcttactgtaaataaactgaagcacgttactcacccaaataaacagttttcaggagaggaatctgtgtagattaatatccagcactcgtttgactttgaaagagctagatttgtttactgagacgctccaccggcaagcgaccacccccggtgggggaagggaaacatggcgccacccctgttcactttgatataggcaccctttctagtgtcacttaacgcgccttataatgcgatgcgccctatgtatggaaaaatagcagaaaataggcgttctttgatagtgcgtcttataatacggtgcgccttatagtccgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51177 True 652 lncRNA 0.44 2 20099119 20099850

Neighbor

gene id symbol gene type direction distance location
LOC103042203 NA coding upstream 249799 19840306 ~ 19849320 (+)
LOC103040580 mapk8b,mapk8,LOC108437314,LOC107709004,LOC106962379,LOC106579004,LOC103040580,LOC108274025,LOC107720002,LOC107388204,LOC107653969,LOC101073575 coding upstream 364442 19708665 ~ 19734677 (+)
LOC103038698 zdhhc16,zdhhc16b,LOC108444288,LOC108273908,LOC107602426 coding upstream 643766 19436361 ~ 19455353 (+)
fam20a fam20a coding upstream 680367 19391442 ~ 19418752 (+)
LOC103044175 NA coding upstream 713265 19361821 ~ 19385854 (+)
LOC103045523 LOC108437318 coding downstream 194389 20294239 ~ 20299561 (+)
LOC103030679 LOC108437319 coding downstream 589816 20689666 ~ 20691726 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding downstream 602410 20702260 ~ 20708857 (+)
tnfrsf13b NA coding downstream 625201 20725051 ~ 20733671 (+)
nt5m nt5m,LOC107719901 coding downstream 700270 20800120 ~ 20811142 (+)
G37940 NA non-coding upstream 50304 20048414 ~ 20048815 (+)
G37938 NA non-coding upstream 71959 20026925 ~ 20027160 (+)
G37937 NA non-coding upstream 75773 20023141 ~ 20023346 (+)
G37935 NA non-coding upstream 92992 20005912 ~ 20006127 (+)
G37930 NA non-coding upstream 135147 19890515 ~ 19963972 (+)
G37950 NA non-coding downstream 81726 20181576 ~ 20181834 (+)
G37952 NA non-coding downstream 91562 20191412 ~ 20191686 (+)
G37969 NA non-coding downstream 317023 20416873 ~ 20417180 (+)
G37972 NA non-coding downstream 345999 20445849 ~ 20545637 (+)
G37974 NA non-coding downstream 409829 20509679 ~ 20511186 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 587678 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 614204 19481056 ~ 19484915 (+)
G37749 NA other upstream 767458 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 1391391 18645635 ~ 18707728 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 1722774 18371378 ~ 18376345 (+)
G37943 NA other downstream 55878 20155728 ~ 20158339 (+)
G38079 kif22,LOC107664627 other downstream 919319 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 1009230 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 1066718 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 3647619 23747469 ~ 23747541 (+)

Expression


Co-expression Network