pmp22 (pmp22,LOC107684480)


Basic Information

Item Value
gene id pmp22
gene name pmp22,LOC107684480
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12991143 ~ 13009673 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248745.3
GGGGCTGAAGCGAAGCGCTGTGGAGGTTCTGCCTGTGGAAGTGTGTGGAGATACAGCCGCGGACTGGACTCGGTACCGCTGCCCCTGCCCTGCTGAAGCTCCTGCTGCTGATTTTTACACTTTCCTCCATCCCTTTTTTCTCTGGAATTACTTTACCTTTACTCCCAGACCTTGAGGAACCATGCTGATCCTACTCTGTGGAATCATCTTCCTGCACGTTGCAGCCATAGCACTGCTGTTTGTGTCCACTATCGTCAGTGCCTGGACTGTAAACCCCACCAGCAGTGGAGACCTGTGGGTCAACTGCACCTCATCCAATGGGGCCTACAACTGTGAGACGCTTGAAACCGGAGTATGGATTCAGGTGGTCCAGGCTCTGATGATCCTGTCAATCATCTTCAGCTTCCTGTCCcttttcctgtttttctgcCAGCTCTTCACTCTGCAGAAGGGCGGTCGCTTCTTCCTCACCGGAACTTTCCAGATCCTTGCCAGTCTTTTCGTCATGAGTGGAGCGATCATCTACACAATAATGAGTCCGGAATGGACCGCCCCATCCGATTCCTTCGGCTTCGCCTACATCCTGGCCTGGGTGGCGTTCCCTCTGGCGTTCATCAGCGGGTTAATCTACGTCATCTTGAGGAAACGAGAATGAAGTGGCGCCCCCTAGCTCTGGCCACCAGAAGTCTAAGCTCTGAAGCTAAAGTACCGCACTGCATCCACAGACCAGATTCTTGTGACGGCCGATATCCACACATGGAACCCACCACGACGCCCACCGAAAATAAGAAAGACATATATAACACTCAATACTGTCATGATTTGAAGATGTATATAGTATCTATGGTTTAAAACCTATTTATAACACTTTTTACATATATGTACATAGTATTGTTGTGTTTGTTGACAAAGAACCTCTTAAGAGCTTTTTGTTTTAGCTAATTAAGTGcctaaagtgtgtgtttgtcagaGGTTAGTACACTATTAGCCAAATTGTGtgtctattttattttcttatactGCCAGAATAAGGTTGTTTGAAGTATTTTAACCAAAGAGCATGTATTAAATATAGagtgttttaaatgaaacaGAGAAGTTCTAGAAATAGAACTAATATAGTAATACGACTATTGAGGCAAATCGAGGAGCTATTCTTGggcaaatagaatagaattgttGGCCATTTCCTGCTTCTAtgataaataattttaagtttatttttttttttatcattatttttattcaacaaaATGGTGCTATGTATTTACCATTCCTATAGCCATGTTTTAGCCTTTATCTAGCCAGATAGGAAATTTAATTCAAGCAGACGCCTAGGAGTAGAGATGAGATGCACATGTGCCTACCTGCTTCTGTACATAGCCTACTAACCTACTTACCAAAACGACTCattttgtaaattaataaaaacatgttttaattaatgtaaaacttGATTTTAAGTATGGCGATTGGTTTCTGACGGCTTAGTAGACATAGCTGGTAGAGGTCAGTGGTATTAacatataataatgtatttatattttaatctgaGAGTACAGTGGTAGGATTTCTGAGATTTAATTCAATATcaggtcagttttttttttatataggtaccacttaaaaataagtcttctttataaagggtttataaataggttataaatgtgtttattaatggtgtattaataaatgaaccctttcagacctgaatcaATTCCAGTGGAATGGAAAattataaaaactgtaaaataaacatgataaaaactcaaaaaaatctaaaacacttaaaattattattattatttccccccccccccccaatgcAGTGGGAGGGGCTAAGCTACCATTTCATTGGCTTGTAAActtgtttattggctggttcacATTCTATTCTGATGGATATCAGCTgtcaaatatgttttatgtgcataaaaactttaaaacaagaaaatatatGGTGTCCAAtataatggatgcagggtctgaatgggttttttttattttattttaaatacttagattaataaacattatttatgcACTTACAACCTATAAATcgacagaacagaacagtgaCAATGACTTATATTGaacatatgtaataaaataatatagaaaatcaAATTAGACTTTTTAGTATGTTATTacagttaaattaattaaattaaatataagttattaacagaaatgttaaagCTGACTGAttgaaaagacaaagtaagatcagaATCTAgtagtaagatctgaggtttaacagtataaacgtatgtgaaatcactatttggtacatGACAGGTCACTATTCAACACTAttcatgtgttgtaactgcttattaatggtttataacctaatttttaaccattaataaactcctttataagctatttataaaccctgtaacactttctatgaatgtcatctctattaaaCCCTATAtgactctataaacacattcataacatgttataaagcATTCATAAGTCATTATAagcatggctatacatatttataaacctttttgtatctatcattaataatctagtcccacaatgaaagtaaTGTCACTTTACATGGAGCGCACATAAGAGACACATACATTATAACagtgattataattaatattacattCAATATAGTTAGAGCATTATACAGAAGGTGTTTATAAGTtgttatacactgtatatgtttttataagctttttatagttataatgcataattctgctgggactgagtttcttggtattgacgtatataacatgttataaacacagctattttaatgcattatgattACAGTTATCACATAATGCATATAAAACTTTGCTTATGTAgggttatacattttattaaaaaaaaatatatattatgtataatcatgtttataatgccttataatgtgttataagtatGTTCTGTATAGAGTCTTACATTCATAGCCATGAAtcttatattataaattataaaggagctttattttaaagtggaataTAGCCAGGAGggcattacagcattacattaGCAGATCCCACCAGGAAGGTCTAAACTGCTTTATATGGTCATTTATATGGTGACTTGAAGATAATGAGGAGAAAGTGATAATGAAGAGAGTGTGAGTgcctataaatatatgtatactaCATTAATCTGTATTGTAAATTTTTGACCCATTGTGTCTTCAGCTAGCAAGAAAAACGCCAAAGAgaacctaacccaaaccctgTGATAATTAAACTTGcagttaaatacattaaaactgtagttctgtatgTACTGAAGtttactcttattttttatcGATTTAATTAAGGGAATGGTAGAGCTTGTTCTGGTGAACGCTGCCTGCAGATGTGACGTCGGTGTGTGAAAAGTGTGAACCTCGTGCGAAGTGTTTCTGTGCAGTTTTTGTTTTAGCGAAATTCTGCTGATACTTGAAGCGTAACATGCTGACGACGTCTGCAATATCGAATTGTGTTGAACTGTATCCAGCTTGGGAGATCAAAGTGATCAAAGTGATTGATCAAAGTGCATCACAGTGTTGGAATAATAACATACACTTGTGAACTTTCCCTTGTAAAGGACCATGTAGGAGAAATCTATAGTCGGATCCCTCCgcaagaaatatatttaaaaatatatatatatatata

Function

symbol description
pmp22 Predicted to enable cytoskeletal motor activity. Involved in bleb assembly and cell death. Located in plasma membrane. Implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies.

NR:

description
peripheral myelin protein 22

GO: NA

KEGG:

id description
K19289 PMP22; peripheral myelin protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248745.3 True 3656 mRNA 0.35 5 12991143 13009673

Neighbor

gene id symbol gene type direction distance location
tekt3 tekt3,LOC107753251,LOC107684491 coding upstream 15123 12964782 ~ 12976020 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding upstream 159824 12717653 ~ 12831319 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding upstream 280775 12704338 ~ 12710368 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding upstream 299075 12671545 ~ 12692068 (+)
jakmip3 jakmip3 coding upstream 326215 12603957 ~ 12664928 (+)
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding downstream 287875 13297548 ~ 13305858 (+)
LOC103038526 NA coding downstream 343182 13352855 ~ 13359288 (+)
heatr1 heatr1 coding downstream 413364 13423037 ~ 13459971 (+)
arg1 arg1 coding downstream 450978 13460651 ~ 13471964 (+)
nudt13 nudt13 coding downstream 491374 13501047 ~ 13508892 (+)
G36106 NA non-coding upstream 36432 12954411 ~ 12954711 (+)
G36011 NA non-coding upstream 153823 12835279 ~ 12837320 (+)
G36004 NA non-coding upstream 196939 12772988 ~ 12794204 (+)
G35992 NA non-coding upstream 293935 12696949 ~ 12697208 (+)
G35972 NA non-coding upstream 295527 12694830 ~ 12695616 (+)
G36129 NA non-coding downstream 207111 13216784 ~ 13278356 (+)
G36146 NA non-coding downstream 297420 13307093 ~ 13311608 (+)
G36154 avl9 non-coding downstream 313501 13323174 ~ 13325570 (+)
G36155 NA non-coding downstream 316262 13325935 ~ 13336434 (+)
G36166 NA non-coding downstream 382972 13392645 ~ 13394580 (+)
G35995 NA other upstream 288087 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 424202 12111690 ~ 12566941 (+)
G35967 NA other upstream 620181 12366540 ~ 12370962 (+)
G35903 NA other upstream 1188939 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 1989338 10747637 ~ 11001805 (+)
LOC103039668 LOC108435045 other downstream 492573 13502246 ~ 13520702 (+)
G36371 NA other downstream 1453464 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1555252 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1779707 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 2423156 15432829 ~ 15440157 (+)

Expression


Co-expression Network