psme2 (psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955)


Basic Information

Item Value
gene id psme2
gene name psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13297548 ~ 13305858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669132.1
CTTCTTCTAGCGCTTCTCACagtcactgttgttttattgagatCCTGATCAAACCGAAAGCGTTTAATCACACTCAGAGAAAGTGTTCACCCCGCTGCTGCACCTGGACTTCACCTCACCATTTATccacagagagaaggagagaataaTCAGCGGAAAGCAGCGCGAAATGTCCAAATTCAAGATAAGCGGAGAGAACGGCCTGAAGGTTGACAACTTCCGTCAGGCACTGTATCAACAGgCGGAAAGCCTTTTTTGTAATCATATTCCTCTGAAGATATCTCAGCTGGACAACCTGCTTAAGGCTGAtgaattcagtgtttctgaCCTTTCCTCTCTGCACGCTCCACTGGACATTCCCATCCCAGACCCCCCTCCACCAGAGGATGAGGAAATGGAGACCGATaatgaagaagagaagaagaaacCTCCCAAATGTGGGTTCATCAAAGGAAACGAGAAAATCATAAAGCTGCTGGATATTGTTAAGCCAGAAATTACCAGTCTCAAGGAGACCATCATCACAGTCGCCTGCTGGATTTCACATCTAATTCCCAAAATAGAAGATGGAAATGATTTTGGAGTCGCTGTTCAGGAGAAAATCCTGGAGAGAATCGCTGCTGTGAAGACTAAAGTGGAGGGCTTCCAGACCAACATTAACAAATATTTCTCAGAGCGAGGTGATGCAGTGGCTAAGGCCTCTAAAGATACTCATGTGATGGATTACCGTGCACTAGTTCATGAGAAGGACGAAGCTACCTACTCTGAAATCAGAGTGATCGTGCTAGATATCCGCGGATTCTATGCGGAGCTGTATGATATCATCAGTAAGAACCTGGAGAAAGTGACCAATCCTAAAGGAGAAGAGAAGCCTTCCATGTACTGAGGCTGAAAGACAAATCAGGGTTTTCTgtagttttgtttctttttaggaAATAGGCTTCCAGATTTGCCTCTTCATTTTAACCACAACAGCTGTAGTCTGTTTCTTATTTCAGTCCAAACCAATAAATCATCTCTGATGCTGTACACTAAA

Function

symbol description
psme2 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME2 (proteasome activator subunit 2).

NR:

description
proteasome activator complex subunit 2-like

GO:

id name namespace
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
K06697 PSME2; proteasome activator subunit 2 (PA28 beta)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669132.1 True 1036 mRNA 0.44 11 13297548 13305858

Neighbor

gene id symbol gene type direction distance location
pmp22 pmp22,LOC107684480 coding upstream 287875 12991143 ~ 13009673 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding upstream 321528 12964782 ~ 12976020 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding upstream 466229 12717653 ~ 12831319 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding upstream 587180 12704338 ~ 12710368 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding upstream 605480 12671545 ~ 12692068 (+)
LOC103038526 NA coding downstream 46997 13352855 ~ 13359288 (+)
heatr1 heatr1 coding downstream 117179 13423037 ~ 13459971 (+)
arg1 arg1 coding downstream 154793 13460651 ~ 13471964 (+)
nudt13 nudt13 coding downstream 195189 13501047 ~ 13508892 (+)
ccser2 NA coding downstream 219905 13525763 ~ 13630014 (+)
G36129 NA non-coding upstream 19192 13216784 ~ 13278356 (+)
G36106 NA non-coding upstream 342837 12954411 ~ 12954711 (+)
G36011 NA non-coding upstream 460228 12835279 ~ 12837320 (+)
G36004 NA non-coding upstream 503344 12772988 ~ 12794204 (+)
G35992 NA non-coding upstream 600340 12696949 ~ 12697208 (+)
G36146 NA non-coding downstream 1235 13307093 ~ 13311608 (+)
G36154 avl9 non-coding downstream 17316 13323174 ~ 13325570 (+)
G36155 NA non-coding downstream 20077 13325935 ~ 13336434 (+)
G36166 NA non-coding downstream 86787 13392645 ~ 13394580 (+)
G36177 NA non-coding downstream 168296 13474154 ~ 13474794 (+)
G35995 NA other upstream 594492 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 730607 12111690 ~ 12566941 (+)
G35967 NA other upstream 926586 12366540 ~ 12370962 (+)
G35903 NA other upstream 1495344 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 2295743 10747637 ~ 11001805 (+)
LOC103039668 LOC108435045 other downstream 196388 13502246 ~ 13520702 (+)
G36371 NA other downstream 1157279 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1259067 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1483522 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 2126971 15432829 ~ 15440157 (+)

Expression


Co-expression Network