LOC103023844 (LOC108443155,LOC106596407,LOC107689097)


Basic Information

Item Value
gene id LOC103023844
gene name LOC108443155,LOC106596407,LOC107689097
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15808205 ~ 15811853 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255131.3
AGCGGTCATGCATCTGACCCTGAAGTCCCTGGCATGGACATGAACTCTGAACTCAATGCATGAATAATAAGGGAGGTTGGTGAGCAGAAGCTGGAGGAGATGCGCTCTCCGGAGGGGTTCACTTTGCTCCTCTTCAGTGGGACAGTGTGTCTGTCAGTTTTTGGCCACCCAGATGCCCAAGGCAGCTTGTCTCCTGACCAGTCTCAGGCAGTCGACGCTAAGCTCCAAGAtggagctgctgcttttccaaGAAGGAAACGATCCATCAACACGAAGACTCCCACCAGCCTCCTACTGGAGCTCAATAGTCGCTTCCTAAAGGATGACAAGCAGGAACAGTGGGAGTCCAAGTCCAGAGATGCTAAAGCTCAGGCTTGGGTTAAACGGTGGCCCCTGGTGAAGTCAGAAAAGTTCCAAAAGCTGTTTGGCTGGGGAGACTTCTACTCCAACATCAAAACAGTACGTCTAAACCTGCTCATCACTGGGAAGATTGTGGACCACAGTAATGGAACGTTCAGCGTCTACTTCCGTCACAATTCCACAGGCCAGGGTAACGTCTCGGTTAGCTTGGTGCCTCCAGGGAAGGTGGTGGAGTTTGACTTGGAGCGTCAAAGCGTGGTTTACCCCAAAGACTCCAAAACCTTCACCTGCCGTGTAGACTATGAGAAGGTGGAGCGCAGCGAGCGCACCTTACTGTGCAGCTATGACCCATCAAAGACCTGTTTGCAGGGCCAGACGCAAAGTTACATCTCATGGATCTGCTCCAGACCCCTCAGGGTCATCTGCATCTACATCTCCTTCTACAGCACGGACTACAGGCTGGTACAAAAGGTCTGTCCGGACTACAATTACCACAATGCGCTGCCCTACCTGCCGTCAGGCTAGGCTTAATAATAAGGATGGAATACAGTGGAAAGATGTACACCGATCAAGCAAAACATTATGAACACTTGTTTCTATACCcagtaatatatttattatccgcctttcatcctgttcttcaaGGGCCAAAACCCCACTCTCTGATCCACCTGTACTAGAACAAAACACGCCAGATTTGTAGTGGTGcggtggggtcctgaccattgaagactACTACAGCTAGCTATAAAATGCATGTTAGGTGTTGAAACAAGGAgctggtcataatgttatgcttgatcagtatatacagctctgaaaaaataaccacttaaataat

Function

NR:

description
PREDICTED: neurexophilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255131.3 True 1201 mRNA 0.49 2 15808205 15811853

Neighbor

gene id symbol gene type direction distance location
LOC103033971 NA coding upstream 135761 15621311 ~ 15672444 (+)
LOC103028270 mpp2,LOC108410806,LOC108273574 coding upstream 287611 15441567 ~ 15520594 (+)
LOC103029312 NA coding upstream 385110 15407485 ~ 15423095 (+)
LOC103029630 NA coding upstream 401849 15393015 ~ 15406356 (+)
LOC103030376 raraa,rara,LOC108410801,LOC107678286,LOC107745620,LOC107716487 coding upstream 424317 15224452 ~ 15383888 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding downstream 337985 16149838 ~ 16175195 (+)
arid5b arid5b,LOC107727057 coding downstream 446307 16258160 ~ 16397388 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding downstream 596111 16407964 ~ 16527247 (+)
LOC103046195 NA coding downstream 645562 16457415 ~ 16459913 (+)
LOC103044975 reep3,LOC108412837 coding downstream 904038 16715891 ~ 16752203 (+)
G36618 NA non-coding upstream 33615 15748774 ~ 15774590 (+)
G36584 NA non-coding upstream 128885 15608092 ~ 15679320 (+)
G36582 psmc5,LOC102777430,LOC107684752 non-coding upstream 260679 15541114 ~ 15547526 (+)
G36560 NA non-coding upstream 428277 15376282 ~ 15379928 (+)
G36532 NA non-coding upstream 608132 15199822 ~ 15200073 (+)
G36708 NA non-coding downstream 60695 15872548 ~ 15879307 (+)
G36706 NA non-coding downstream 62561 15874414 ~ 15875884 (+)
G36707 NA non-coding downstream 70604 15882457 ~ 15885873 (+)
G36705 NA non-coding downstream 85328 15897181 ~ 15898165 (+)
G36721 NA non-coding downstream 110919 15922772 ~ 15924714 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 368048 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 1017372 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 1240293 14564925 ~ 14567912 (+)
G36371 NA other upstream 1344566 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 2287503 13502246 ~ 13520702 (+)
cabcoco1 NA other downstream 401937 16213790 ~ 16233839 (+)
sun1 NA other downstream 1188529 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 1389644 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 1420967 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 1439128 17250981 ~ 17282231 (+)

Expression


Co-expression Network