slc16a8 (slc16a8,LOC107197668)


Basic Information

Item Value
gene id slc16a8
gene name slc16a8,LOC107197668
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17237424 ~ 17240632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606314.2
CCTCCATCAGCAGGAGGATGGGGGCTGGTGTTGTAGATAAAGTGAAGCCTCCAGATGGAGGCTGGGGCTGGATCGTGCTTCTTGGGGGTTTCGTCATCACAGGCTTCTCCTATGCCTTTCCTAAAGCCATAAGTGTGTACTTTAAGGAACTGATGCGAGACTTTGGGTGTGGCTACAGCGACACGGCATGGATTTCCTCCATCATGCTGGCCATGCTGTATGGCTCAGGCCCAGTTTCTAGTATTATGGTGAACAGGTATGGCTGTCGTCCAGTCATGCTCTTTGGGGGACTGTTGGCATCAGCTGGGATGATTGGGGCTTCTTTTACCACCAACATCATTCAACTTTACCTCACAGCTGGGGTAATCACAGGTCTTGGCCTGGCTCTGAATTTCCAGCCCTCTTTAATTATGCTTGGATGCTATTTTGATAAGCGCAGGCCTCTGGCCAACGGACTGGCTGCTGCTGGGAGTCCAGTCTTTCTATCAGTTCTCTCTCCACTAGGACAAGTACTGCTGGAACGCTATGGCTGGAGAGGTGGCTTCCTCATCATGGGCGGCTTGCTGCTTAACTGCTGCACCTGTGGAGCTGTTATGAGACCACTGAGATGCAGAGTTAGGACAACTGCAGCCAGGGGTGAGGCGAATGCTCTAGAGCTGAAAGAGATGCTGCCATCAAAACCTGGCCAGGAGAACAGCAATGTAAATACTAAAGCTAATAaggaaaacaacaagaaaaagaagcTCCTTGATTTCAGTGTGCTTCGTGATAAGGGACttgtaatttatattattgCCAAATTCATAGTCGTCCttggtttgtttgttccaacaattCTCTTGGTCAACTATGCCAAAGACCAAGGTATTCCCGACAAGGATGCAGCCTTTTTGCTTTCCATTATTGGATTCATTGATATTTTTGCTCGCCCAACATGTGGCATAGTGGCAGGCCTAAAATGGGTAAGGCCCAAGATGCCCTATTTCTTCAGCATAGCCTTACTTTTTAATGGCCTTACAGATGTTTGCTCAGCCAGAAGTACAGACTACAAAGGACTGGTTATCTTCTGTGTGTTCTTTGGGCTTTCATATGGTATGGTGGGAGCTCTGCAGTTTGAAGTGCTGATGGGTATTACAGGAACTGACACTTTTTCCAGCGCCCTGGGACTGGTGCTTCTTTTTGAGGCAGTGGCAGTACTCATTGGACCTCCTTCTGCTGGGCGTTTAGTGGATGCTTACAAGAACTATGAGCTGATTTTCTATATGGCTGGAGGAGAGCTGATCACGGCTGGCATATTCCTTACTGTAGCATCATATTGCTGCCTCAAGCGACGAAGGAATAAGGACACAGGCTTGGGAGAAGACTCTGATATTGAGAGCAACCATACTGAACATAACCATAATAGCCATGAATCCAACTGTGCCATAAAAGATAATGAAAGATAGAGGTGTAAGATTACAATGTGCACAATGTAAATTGATGGGAAATTTAGTTCAGTtattcagatataaaagtgtaagtggttgtttttacatttaaatcaatatgttttttaaaatttattgtgGTAATTATCATGTCTAGACAGCTAGTAGTGTATATCTAAGTAGTCAGCTACTTAAGTTGCAAATCCTAAGTCCTTAATCCTAAGTTGCAAAACCTACGAGTTCCATTTATCACGGAAGTTGGAGGTCACCTCTCGGAATTACACAATTACAAAGTTACACTATGTTGAAGGCATTCCAGTCTTGTTGACACTGTTTATGGTAAATCGAGGTTAGCGCTGTTGGGGATACTAGTTGGTAACAaagcattatacagtatattgtgtgtTCGGCATATTCACAGATAGAAGctggacagtactgtgtgtatgaccGGACTAATGACACAcaaatagataataataataaactgtacaacaccacaatattaattttactactGGTGCAGCCATTTTGGATACTGAAGTTCCCACTCAAACTTGACAATTCTGTCATCTGAGTTTaacattatatatgttttagtaattcAATGTTACTTATGTCTAATTATAAA

Function

symbol description
slc16a8 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC16A8 (solute carrier family 16 member 8).

NR:

description
PREDICTED: monocarboxylate transporter 3-like

GO:      GO:0044765

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606314.2 True 2058 mRNA 0.43 4 17237424 17240632

Neighbor

gene id symbol gene type direction distance location
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding upstream 88076 17132606 ~ 17149348 (+)
LOC103032149 NA coding upstream 105711 17123605 ~ 17131713 (+)
eef2k eef2k coding upstream 121416 17097309 ~ 17116008 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding upstream 144814 17082313 ~ 17092610 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding upstream 157645 17068936 ~ 17079779 (+)
LOC103027934 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063 coding downstream 1062 17241694 ~ 17247513 (+)
LOC103024972 csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422 coding downstream 103305 17343937 ~ 17358593 (+)
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding downstream 118091 17358723 ~ 17374122 (+)
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding downstream 145262 17385894 ~ 17390425 (+)
dmc1 dmc1 coding downstream 151098 17391730 ~ 17396057 (+)
G37001 NA non-coding upstream 13017 17224041 ~ 17224407 (+)
G37000 NA non-coding upstream 13724 17223335 ~ 17223700 (+)
G36998 NA non-coding upstream 14549 17222400 ~ 17222875 (+)
G36983 NA non-coding upstream 64799 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 67568 17169351 ~ 17169856 (+)
G37055 NA non-coding downstream 227325 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 227848 17468480 ~ 17468772 (+)
G37058 NA non-coding downstream 229692 17470324 ~ 17470774 (+)
G37060 NA non-coding downstream 234786 17475418 ~ 17475771 (+)
G37066 NA non-coding downstream 268785 17509417 ~ 17509619 (+)
cby1 cby1 other upstream 2865 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 32391 17201497 ~ 17205033 (+)
sun1 NA other upstream 196467 17000382 ~ 17040957 (+)
cabcoco1 NA other upstream 1003585 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1797267 15432829 ~ 15440157 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 10349 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 56847 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 465047 17705679 ~ 17708597 (+)
G37098 NA other downstream 474497 17715129 ~ 17715992 (+)
G37099 NA other downstream 477599 17718231 ~ 17719376 (+)

Expression


Co-expression Network