G53255


Basic Information

Item Value
gene id G53255
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5043902 ~ 5044161 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60648
CGGAGTTGGGCAATGCGACGTAGATGAAAGAATGCAGATTTGGTAATAGAGGTAATATGAGACTGAAAGGAAAGGTGGAGTCGAAGATTACACCTAAATTTTTAACAGTACTAAAGCATAAAAATACCATAAATTTGCAGGAAACATTTAAATTCACATACTTTTTTTCTCAGAAAAACAATGCAACAGTGAGCTATTCTACTTTGAAAAGTGCGTTCCATGTTGGAATGTCTGTTTTTGTTTTGGTCCGTGTGATCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60648 True 260 lncRNA 0.51 1 5043902 5044161

Neighbor

gene id symbol gene type direction distance location
CI01000009_04987804_05029077 DIRC2 coding upstream 14825 4987804 ~ 5029077 (+)
CI01000009_04965404_04975323 SLC15A2 coding upstream 68516 4965404 ~ 4975386 (+)
CI01000009_04897197_04933164 GLI2, GLI2A coding upstream 110660 4896407 ~ 4933242 (+)
CI01000009_04866883_04867968 NA coding upstream 175353 4866751 ~ 4873730 (+)
CI01000009_04763889_04769573 INHBB coding upstream 274073 4763320 ~ 4769829 (+)
CI01000009_05102641_05105265 NA coding downstream 58421 5102582 ~ 5105811 (+)
CI01000009_05106385_05110040 NA coding downstream 60786 5104947 ~ 5110141 (+)
CI01000009_05194517_05218620 PDIA5 coding downstream 149837 5193998 ~ 5218752 (+)
CI01000009_05261948_05270622 SEC22A coding downstream 217787 5261948 ~ 5271087 (+)
CI01000009_05384160_05398034 CACNB4A, CACNB4 coding downstream 339999 5384160 ~ 5398037 (+)
G53242 NA non-coding upstream 56779 4985532 ~ 4987123 (+)
G53223 NA non-coding upstream 100247 4943332 ~ 4943655 (+)
G53219 NA non-coding upstream 105762 4937857 ~ 4938140 (+)
G52981 NA non-coding upstream 210295 4832803 ~ 4833607 (+)
G53256 NA non-coding downstream 127 5044288 ~ 5044504 (+)
G53257 NA non-coding downstream 544 5044705 ~ 5044940 (+)
G53352 NA non-coding downstream 321689 5365850 ~ 5367950 (+)
G53338 NA non-coding downstream 355432 5399593 ~ 5402228 (+)
G53382 NA non-coding downstream 364283 5408444 ~ 5408764 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 1834918 3202207 ~ 3208984 (+)
G51529 NA other upstream 1981315 3062033 ~ 3062587 (+)
G51274 NA other upstream 2693416 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3142476 1897343 ~ 1919516 (+)
G51122 NA other upstream 3361936 1680146 ~ 1681966 (+)
G53388 NA other downstream 478081 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 816141 5931718 ~ 5943899 (+)
G53651 NA other downstream 1201403 6245564 ~ 6248392 (+)
G56100 NA other downstream 4085139 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4809198 9853929 ~ 9856587 (+)

Expression


Co-expression Network