G15995


Basic Information

Item Value
gene id G15995
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2330822 ~ 2333256 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21631
AGTGTATATGGCCCTCAGTAAATTCATAATTTGCATTATACACTAGTTAGTTCATGGTCCCACTGTGAGGTCCTGTTTTTGCAAGTGTTTTTAGGGAGGGATGTTACCGTGTACATATAAGTGAGATCTCAGACTTTCCAGGGTCAACTGAAAAGTTATCAAGAGCAAACGTCTTAGTCTGTGTACAGCTTTTCTCACATTGAGAAACATCCTTACACGTTCATTTATTATGTAATTAAGTATTTTCTTTTGACCCTTCccatctttttttaagtaaaaataacagGTTGCAATCACTTCTCAGATCTGAACAAACACCATGCAGAAAGCAGTGACCAGGATGAGAACTCATGTTCACTGTGTGTTTccagtttattgaataaatttGCAACATATAAAGTGGTTCTGGTGTTGATCTTTTACTGATAAACCCCATGTAACATCTCTGCATATCCATACTTTTCTGAAATAATGTGATCAAATGAAGACAGTGTGCAAGATTTCTTTCCATTTTTGAACAATATCAGTTCAGTCAAATTTAATAGAATCTATTAGAGCTATTCATATTTCCAGAAAGCTGAGAAGACCATATTAATAGTgctcaataatataataaaatataatacctCATGAATGTctagacaaaataaaaatacagattacattaatatttaaggATACCTTGCAgtcgtttattttttttttcttcctttgttttttttttttttttagtagtttctgttaaaataatacaatgacTCGTATGATGTAGAAAGCAGAAGggggaaaaacacaaacaaggaATTAGGTCTCTAAGAGATGCAGTGTTGGTCATAATTATACAATTTTACACTTAAAATAAGACCTTTCATGGTCTGTTAAGTCTGtgcatttttttctgaagctTTTCCTCTTCATATAACTTCATTCCCAAATTCCAGAAAAAATATCCATGTCATAATCCGATAAGACTTcaggttgggttgagttggctTGTACAATAGCAGTATGTAGCGCCTCAACCCACAATGatgagtcttggtttctcttGGTCATTGCTAATATGCCATAGAGGTTTTTCAGTAGCTTCATTCAAAAGAATGTGGTAGACGAtgataaatacagttttaaaagctTAAACTTAGGCTTCTGGTTGGTTGAGAGGAGATAGATATGTCCCTTCAGAGATCTTCAAGGTGATGTGCtccaaaatgcaaaatgtaacAGCTTTCATACTGATGTTTACGCTGTAACAGCAGTACGATATACAACACCGTGGAAATGATTCCGCTTTCTACCCTTTCCTCAGAGAAGCTCAATGCTTCTTTATGTAACAGTTCAGTCAGAAGTGCTAAAAGTTGCTTACAGTGAATGAAAGTGAATACACAGCTTCCATTCATTGTTAGCCATGCTAGCATATCTGGTTAAAGGAATTAGCTGCTCTGCCCTCATCAATTTCATCAATTGACTAACTTAATATATGGTGCTTTACAGTCAACTTCTGGATAAAGTCCTCATTTAGACCTAATGCTAATTTGAGTGTCAGTAACGCATTACTGTTCTCCTtaaccacaagttaacattcATACCCATATCCATATACAATAAGGAATGAACTAGTAGGCTGTGGTATTAGGCAGTCCTTATGAAGGACAGTTCATGCATTAGATTTtgtccatttgttttttttttttgtttgtttgtttttttttataaatgaggcCTAAGGCTTAGCTAAGGCCTAAAATACCTCATAAAACTACACCTGGTATCTTTATTGGCTTTAATATCAAACCTCATCTCATCCAGTCATAATCTTCACggggggtggctgTCATGTCGTATATCATCTACCCTCAAGTGAAATATCTCAGTAGGTAAAAGTGGGAAGTTCCAGGCTAGGCTGTAGTTTATCCTCAGTGATCTCCTGCCATTATCCTGTCTTCCTTTTGTTTCTGTCCAAACCGCTGACCCATAGGAGGCATTGCGTTCTGAGTTCATAGGAGAGAATTTCAAAAAGGTGGACTGTTCATGCAGACAGGAAGTGGAATGTTCAATAGTCACAGCTCCAGTACGCAGCTGGCAGATGCAGTGGTCAAGGAATATCTTCATGTCCTCATTTATAATCATcttcatcaatcatcatcatatttttttcctccctgtCCCAAAGGTGCTTGGAAAATGTTTTTAGCGATTAGCtggagtgtgtgggtgtttgtAGGCTGGGTATAAGAGGGAGGGCTGATCAACGCCTGTGTATGACGTCCGATATGCTTTAATATTCATGCATGTTGAGCTTGGAGTATAAAGACCACAGCATTTTCCCAAAATCTCTGCATCTGCTGCAATTCCAGCATGAAGTCCACAGCAGTGGAAACACTAGCTTTTatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21631 True 2394 lncRNA 0.37 2 2330822 2333256

Neighbor

gene id symbol gene type direction distance location
ccdc84 ccdc84 coding upstream 281 2325547 ~ 2330541 (+)
LOC103045030 foxr1 coding upstream 5271 2320857 ~ 2325551 (+)
upk2 NA coding upstream 12455 2315209 ~ 2318367 (+)
pou2f3 pou2f3,LOC107664296,LOC107691752,LOC107600771,LOC107556425,LOC107712933,LOC107744320 coding upstream 16522 2298591 ~ 2314300 (+)
LOC103038019 LOC108428643 coding upstream 35322 2281756 ~ 2295500 (+)
derl2 derl2,LOC106567674 coding downstream 230547 2563803 ~ 2569599 (+)
LOC111191739 NA coding downstream 240195 2573451 ~ 2576652 (+)
rabep1 rabep1,LOC107691762 coding downstream 256323 2589579 ~ 2616863 (+)
LOC103041644 LOC103041644,LOC108428528,LOC107709757 coding downstream 309341 2642597 ~ 2685350 (+)
prkrip1 prkrip1,LOC106567678,LOC107600793 coding downstream 371058 2704314 ~ 2707975 (+)
G15963 NA non-coding upstream 145746 2184854 ~ 2185076 (+)
G15947 NA non-coding upstream 200542 2129879 ~ 2130280 (+)
G15940 NA non-coding upstream 228273 2102272 ~ 2102549 (+)
G15932 NA non-coding upstream 256984 2073539 ~ 2073838 (+)
G15920 NA non-coding upstream 335959 1994425 ~ 1994863 (+)
G16113 NA non-coding downstream 354041 2687297 ~ 2688041 (+)
G16141 NA non-coding downstream 573672 2906928 ~ 2907676 (+)
G16204 NA non-coding downstream 682166 3015422 ~ 3016421 (+)
G16230 NA non-coding downstream 857156 3190412 ~ 3191314 (+)
G16229 NA non-coding downstream 858304 3191560 ~ 3201320 (+)
nrgn NA other upstream 159615 2150630 ~ 2171207 (+)
G15839 NA other upstream 648800 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 801405 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 990022 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 2209641 70784 ~ 121181 (+)
LOC103038305 NA other downstream 2182741 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 3835504 6168760 ~ 6177884 (+)
G16820 NA other downstream 4199140 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 5089315 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 5835583 8168839 ~ 8184837 (+)

Expression


Co-expression Network