LOC103045030 (foxr1)


Basic Information

Item Value
gene id LOC103045030
gene name foxr1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2320857 ~ 2325551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604802.2
CACCTCACTCAATTCACCCCACCTCACACAACTCACTCAACTGACTCACCTGACTGAACTCACCTTTCCCAACTCACCTCATCCACTTCACACAACTCACTCAATTCACTCAACCACTCACCCAGTTCTACAACCTCCTAACCATGATAAATCCCTGAGTGTcccctgtttttaaaataaagcacaATATGGCCCCTGTACATTTCCCCAACATTTTATCCATGATTATAAAAATAAGACTGTCATTACTCAGCCAAAAGTcgagtaaaataagtaaataatctCACTAAAGAAACACAGCAGCTCCAGTCTCAGAGAACTTCTAGAAGCTCCGGTTAGAAATTGTCCTGATTGCTGACACCTGTGCCGGTGACGTCACCAATATAAGATTAACGCTTAATAATAGATTCAGAGACTGTAAAACGTCCTCCTAAAACACAGGAACGACCCAAACTCGAAGGTTAAGGGTGTAAAATGAGCTCGATGTTTCTTCAGCTGCAGGCCAGAGAGAGGTTCCTGAGCCTGCACCTCAGCACGGGCCTGCACGAGTGGGACATGAGCGAGGAGATCAAACTGAGCACCACCACAGACCAGTTCCACAGAGACGATAAGAGGAATGAGCAGTACCTGGCGCAGTGGCACTATGCCAGAATCTCCAGGAGAACACTAGCTGGAGCAGACAGCACCCACCTCGCCCAACCCGAGGACTGCACAGAATCAATAATACAGCCAAGTCTGTGGCTGATTGTGAATCCAAATCTAGCCTGCCCTATAAAATACCCAACTGTTAAAAAGTCATCGCTGCTGAAACTGACTGTAGACACACCTGTCCCGAGTCCTTCCCCACCTGTACCTGTACAAAACCTGCACATCCTGCCGCTGCCTGACCAGACTTGCCTTAATGAGTCACTGCATGACACCTCTCTCTCAAGTGAATATCAGCTTACAGATGATGACACCTCCTCAGTGGATGTGCCGATTTGCCGCAAGGTGAAAGGTGCTAGAAAGGGCCGAGTTCCCAAGGAGCCGTCCTCTCGCAGGCTGGGCCTGGCTCAGAGCCGGAGGCTGCAGAGGGTCCTGCAGGACAGCTGCAACCTGAAAAACGGAGCCTGGCCTCGACCACCTGTCAACTACTGCATCCTCATCGCCATGGCTCTGAGCAGTAGCCGCTCTGGCAGCCTTAATGTGCAGCAGATCTACAACTTCACAAGAGATCACTTCCCTTTCTTCATAACCGCTCCTGACGGTTGGAAAAACACCATCCGCCACAACCTGTGCTTCAGCAACAGCTTTAAGAAGACCCCACAGCAGGTGACTGGAGAGGGGAAGAGGAAGTCCTGCCTGTGGTACCTCACACTGGACGGCCGACGAAGGCTGAGAAACGAGATCCACACACTGACTGTAGACTCCTTCAGGATGCTGAAGAGGAGCATGAATTACCCAGATATGATTCAAGCTCTGTTTGAGTTGTAATCTACCTGCGGGTGCCTCACGCACACCAAAATCCGAGCGTTATGGGGACATTTAATATACTAAtcaatatgttaaaaaatatattatacttaaaCATTGTAGTTGTTGCTACTGTGCTTTAAGctttattaattacttttttctctGTCCACGTGTGTCCAGGTGTTTGTCCATGACTTAATTTATTGTCtaatcactttttttctcattgtgaaaataaatgtactgtTTGCAGTTAA

Function

symbol description
foxr1 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in bone tissue; oocyte stage V; and ovary. Orthologous to human FOXR1 (forkhead box R1) and FOXR2 (forkhead box R2).

NR:

description
forkhead box protein N5

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604802.2 True 1712 mRNA 0.47 6 2320857 2325551

Neighbor

gene id symbol gene type direction distance location
upk2 NA coding upstream 2490 2315209 ~ 2318367 (+)
pou2f3 pou2f3,LOC107664296,LOC107691752,LOC107600771,LOC107556425,LOC107712933,LOC107744320 coding upstream 6557 2298591 ~ 2314300 (+)
LOC103038019 LOC108428643 coding upstream 25357 2281756 ~ 2295500 (+)
LOC103037703 LOC108427349,LOC108259736,LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC571737,LOC107744331 coding upstream 61518 2244461 ~ 2259339 (+)
slc37a2 slc37a2,LOC107691751 coding upstream 79970 2224036 ~ 2240887 (+)
derl2 derl2,LOC106567674 coding downstream 238252 2563803 ~ 2569599 (+)
LOC111191739 NA coding downstream 247900 2573451 ~ 2576652 (+)
rabep1 rabep1,LOC107691762 coding downstream 264028 2589579 ~ 2616863 (+)
LOC103041644 LOC103041644,LOC108428528,LOC107709757 coding downstream 317046 2642597 ~ 2685350 (+)
prkrip1 prkrip1,LOC106567678,LOC107600793 coding downstream 378763 2704314 ~ 2707975 (+)
G15963 NA non-coding upstream 135781 2184854 ~ 2185076 (+)
G15947 NA non-coding upstream 190577 2129879 ~ 2130280 (+)
G15940 NA non-coding upstream 218308 2102272 ~ 2102549 (+)
G15932 NA non-coding upstream 247019 2073539 ~ 2073838 (+)
G15920 NA non-coding upstream 325994 1994425 ~ 1994863 (+)
G15995 NA non-coding downstream 5271 2330822 ~ 2333256 (+)
G16113 NA non-coding downstream 361746 2687297 ~ 2688041 (+)
G16141 NA non-coding downstream 581377 2906928 ~ 2907676 (+)
G16204 NA non-coding downstream 689871 3015422 ~ 3016421 (+)
G16230 NA non-coding downstream 864861 3190412 ~ 3191314 (+)
nrgn NA other upstream 149650 2150630 ~ 2171207 (+)
G15839 NA other upstream 638835 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 791440 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 980057 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 2199676 70784 ~ 121181 (+)
LOC103038305 NA other downstream 2190446 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 3843209 6168760 ~ 6177884 (+)
G16820 NA other downstream 4206845 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 5097020 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 5843288 8168839 ~ 8184837 (+)

Expression


Co-expression Network