G17921


Basic Information

Item Value
gene id G17921
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11050256 ~ 11060895 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24186
ttattataatattattaaatagtgTGACTACTAAGCTAATTAAGAAAAGAAATAGTTcgctataaataaatacaggaatacaaaataatatttgtatttattttatttagcatttttcctATTGGTTTACACTAAATCCAGCCGGCCAATCGGGTGGCGCTTGGAGAGATGTGGGAGTTCTCATTCACTCTGACGGAGATCCGCGCTCTGTTCACTTCCAGCCAGCAGACGAGACGGAGGGTTCTCCAGctgcaaaagagagaaaacacagttttaggcTAAAATTAAGTGTCGACAGCTTATTTCCTAACTTTATTAACCTGTCGCTGAGCAGGAAGCGCGAGTGGGAGAGTGTTTCGTCGAAGAACGACGAGTTTATTACCCTTTTTACACTGGTGAGGGTTTTTGATCGGACGATCAAGTTGGACAAACCATTTGATGGCGAGCCTCCCAGACCCTAACCTAGAGGGTTTTTCTACTTTCCGTGGACTCCCTGTGAACTGATCCTTGTTTTTGAGCTCTGTGAACTGGTAGGAGGAACACTTACCATTGTAAACTCCATGGACTGAATCCATCACCTGTGGAACAAAAGAGCAAAGGACAttaacactcacacaaacaaacacattttgtattgtTATTGAATTCTAAATCCATTTCTAATTGAGTtaattatattgttacattgaacattttgaatattttcctaagaatttatatttatttttctacccGGGTTAGAATTATCTATAttctttgttttatatgtttttttattttcttacctGATTGTAATAAATTGTGAATGCACTTTTCCAATGTCCAACAGTGCCAAGTTGTTTCCTTGAGTAGCTAGTCAGCCGAGCTCTGTAGCGATCCTGGTACTCTTCTGATTGGCCCAAGCGTACACCTAATTTAACTACAAACATACTATCTGCATATGTAAACTAATTATATACAAACCTGTTCATAGATTTCTACTATAGCccttaagtatatatttattatatatatacatatatacatttatttcttatgTAGGTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24186 True 1047 lncRNA 0.49 4 11050256 11060895

Neighbor

gene id symbol gene type direction distance location
LOC103044364 LOC108412379 coding downstream 98157 10884853 ~ 10952099 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 710067 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 771923 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 792383 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 931648 10103179 ~ 10118608 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 286760 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 320107 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 340621 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 507069 11567964 ~ 11588327 (-)
LOC103044795 ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717 coding upstream 535473 11596368 ~ 11606026 (-)
G17859 NA non-coding downstream 195185 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 506649 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 706993 10342796 ~ 10343263 (-)
G17799 NA non-coding downstream 751599 10293586 ~ 10298657 (-)
G17796 NA non-coding downstream 779632 10269491 ~ 10270624 (-)
G17929 NA non-coding upstream 85510 11146405 ~ 11147408 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 719137 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 725337 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 818857 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 903129 11964024 ~ 11970718 (-)
G17792 NA other downstream 802938 10246675 ~ 10247318 (-)
mak mak other downstream 1041105 9995145 ~ 10009151 (-)
G17638 NA other downstream 1487531 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 2163939 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 3042636 7924929 ~ 8007620 (-)
LOC107197924 NA other upstream 15343 11076238 ~ 11083799 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 24585 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 374541 11435436 ~ 11595523 (-)
G18037 NA other upstream 624092 11684987 ~ 11685391 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 720617 11781512 ~ 11796151 (-)

Expression


Co-expression Network