LOC111188216


Basic Information

Item Value
gene id LOC111188216
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8861134 ~ 8886317 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23677
TAGGCACTAAATTATACCTGTCATGGCAGCTCCACCTTAAACTTTGatcactttttgttttcttcagcTCTGTGACTTTCTGGAGAGCCACTTCCTTCCAGACAGCCACGAGACCATTAAGAAACTGGGCGACTACCTGAGCAGTCTGACACGCCTCACTTCAAGCGAGCCCAACGGCCACATGGGAGAATACCTGTTTGACAAGCACACTCTGTGAAGAGGTCCTCTATTGCTGTGGCAGTCTTGCTACTTTTCCAGTTACAAAGACCTTCATTCCTCGGGACCAGTATATTAGCATGACCCAAATGCTCCTGCTGCCAAATttccaataaaaagaaaatatattaagcGTTTTGAGATTTGGAAGGCCAAGCCATTTGAAATCCCTGTGAGAATGAGGTCTTGTGACTGAACAAGCTTAATACCAGCTATGCACACAAAGTAGTGTGAGGGGTAGATTCTCAACCCCAGTTAGATACCTCAAAATATGGCAATAAAGTGTTACAAACTGCGGTGCTGAAAATCTTTTAGCTCCATGTGGTCTGacattttgcttttctttttaaaaacaccTTGTTTGTATCATGACCTCACGATGCCATGTTTCAAATCAAACACTGCcgttagttatttcagccaacaTTCCGTTAACTGTCTCCACTGAAGATGTACCCTCACTGTACCTCTAGGTGCCCCTGCAGGGTCCCTCAGGACATAATCAC
>TU23679
TCTTGGCAACTGAACACAATTGTGGTCATGTGACCATTATcTCTGTGACTTTCTGGAGAGCCACTTCCTTCCAGACAGCCACGAGACCATTAAGAAACTGGGCGACTACCTGAGCAGTCTGACACGCCTCACTTCAAGCGAGCCCAACGGCCACATGGGAGAATACCTGTTTGACAAGCACACTCTGTGAAGAGGTCCTCTATTGCTGTGGCAGTCTTGCTACTTTTCCAGTTACAAAGACCTTCATTCCTCGGGACCAGTATATTAGCATGACCCAAATGCTCCTGCTGCCAAATttccaataaaaagaaaatatattaagcGTTTTGAGATTTGGAAGGCCAAGCCATTTGAAATCCCTGTGAGAATGAGGTCTTGTGACTGAACAAGCTTAATACCAGCTATGCACACAAAGTAGTGTGAGGGGTAGATTCTCAACCCCAGTTAGATACCTCAAAATATGGCAATAAAGTGTTACAAACTGCGGTGCTGAAAATCTTTTAGCTCCATGTGGTCTGacattttgcttttctttttaaaaacaccTTGTTTGTATCATGACCTCACGATGCCATGTTTCAAATCAAACACTGCcgttagttatttcagccaacaTTCCGTTAACTGTCTCCACTGAGGATGTGAATTGCAAAGctaagtaaaataaagtttttaa
>XM_022668236.1
TTCCTCTGATTTTGTTCTTACAGATGCAGTCTGTAGTTAAACACAACCTCCATTCAGAGAGTGAGGGAGCCATTAATAAGCTCATCAACATCAAGCTCACAGCGTCCTACACCTACTTGTCTTTGGGCATGTATTTTGACCGAGACGATGTGGCTCTGCCCAACTTCTCCAAATATTTTCTGGAGCGCTCTGTGAAGGAGAGGGAGCATGCTGAGCGTTTGCTGGGGTATCAAAACATGAGAGGTGGAAGAGTTCTTCTTCAGACTATTGCGGTGAGTGTGGGTCCCGGTTTAAAGTCTTTTCTTCTGTGCAGGATCTTCTGCTTTGTCTTTATTATGTTGCCAGCCCAGTGTTTCTCATTGCTCCAGatcactttttgttttcttcagcTCTGTGACTTTCTGGAGAGCCACTTCCTTCCAGACAGCCACGAGACCATTAAGAAACTGGGCGACTACCTGAGCAGTCTGACACGCCTCACTTCAAGCGAGCCCAACGGCCACATGGGAGAATACCTGTTTGACAAGCACACTCTGTGAAGAGGTCCTCTATTGCTGTGGCAGTCTTGCTACTTTTCCAGTTACAAAGACCTTCATTCCTCGGGACCAGTATATTAGCATGACCCAAATGCTCCTGCTGCCAAATttccaataaaaagaaaatatattaagcGTTTTGAGATTTGGAAGGCCAAGCCATTTGAAATCCCTGTGAGAATGAGGTCTTGTGACTGAACAAGCTTAATACCAGCTATGCACACAAAGTAGTGTGAGGGGTAGATTCTCAACCCCAGTTAGATACCTCAAAATATGGCAATAAAGTGTTACAAACTGCGGTGCTGAAAATCTTTTAGCTCCATGTGGTCTGacattttgcttttctttttaaaaacaccTTGTTTGTATCATGACCTCACGATGCCATGTTTCAAATCAAACACTGCcgttagttatttcagccaacaTTCCGTTAACTGTCTCCACTGAGGATGTGAATTGCAAAGctaagtaaaataaagtttttaaattacaatataa

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005488 binding molecular_function
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03020 RNA polymerase
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU23677 False 722 lncRNA 0.41 2 8861134 8871921
TU23679 False 676 lncRNA 0.41 2 8871219 8886317
XM_022668236.1 True 1037 mRNA 0.43 3 8871207 8873427

Neighbor

gene id symbol gene type direction distance location
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding downstream 29213 8813024 ~ 8831921 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding downstream 84887 8746885 ~ 8776247 (-)
LOC103037764 laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533 coding downstream 204260 8645276 ~ 8656874 (-)
matn2 NA coding downstream 216702 8630223 ~ 8644432 (-)
LOC103038077 NA coding downstream 236991 8610142 ~ 8624143 (-)
LOC103047134 LOC103047134 coding upstream 89141 8975458 ~ 8979618 (-)
txndc5 txndc5,LOC107730007 coding upstream 185065 9071382 ~ 9084286 (-)
bloc1s5 bloc1s5 coding upstream 222697 9109014 ~ 9113905 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding upstream 1184761 10071078 ~ 10078582 (-)
elovl2 elovl2,LOC101268971 coding upstream 1216862 10103179 ~ 10118608 (-)
G17536 NA non-coding downstream 49655 8793865 ~ 8811479 (-)
G17532 NA non-coding downstream 72847 8746380 ~ 8788287 (-)
G17514 NA non-coding downstream 187957 8668990 ~ 8673177 (-)
G17326 hus1 non-coding downstream 701749 8148967 ~ 8159385 (-)
G17313 NA non-coding downstream 804845 8056033 ~ 8056289 (-)
G17558 NA non-coding upstream 25653 8911970 ~ 8960840 (-)
G17585 NA non-coding upstream 98044 8984361 ~ 8985654 (-)
G17589 NA non-coding upstream 111783 8998100 ~ 9442767 (-)
G17600 NA non-coding upstream 181718 9068035 ~ 9157978 (-)
G17599 NA non-coding upstream 218247 9104564 ~ 9108428 (-)
LOC103026934 ahrr,LOC108431062 other downstream 853514 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2316859 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2498129 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2750851 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 2760790 6083120 ~ 6100344 (-)
G17638 NA other upstream 676110 9562427 ~ 9562725 (-)
mak mak other upstream 1108828 9995145 ~ 10009151 (-)
G17792 NA other upstream 1360358 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 2129712 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 2189921 11076238 ~ 11083799 (-)

Expression


Co-expression Network