LOC103037764 (laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533)


Basic Information

Item Value
gene id LOC103037764
gene name laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8645276 ~ 8656874 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234719.3
GGCCGTGTGTCACCCTGGCTGGCAGGCCGCCGCCGCTCCGCTGTCAGTAATCAGCCGCAGGGCGCTGCGGATGATGTGAATGCTGAGCGGAATACGGCGTTTCTGTGTTCTTAGTTCCTCCGGAGCGGAGTAAAGGCTGAGAAGATGATTTCCCCCTGGGAGCGGCTTCACTCTACGcgctgctgtctctgctgccaTGTCCGGACCGGGACCATCATCCTGGGCATCTGGTACATGcTCATCAATGCTGTGGTGCTCCTTATCCTCCTCACGGCACTCAGCGACCCAGACCAGTATCACTTGACGAGCGCTGAGCTGGCCAATGACCTGGACGTGATGGATGACGCCAATATGTGCATTGCTTCAGCAATCTCACTGCTCATGATAGTGATATGTGGCATGGCAACCTATGGAGCTTACAAGCTTCATGCTCCGTGGATCATTCCATTTTTCTCATATCAAGTCTTTGATTTTGCTCTGAATTCTCTGGTGGCGGTGAGTGTGGTGGTCTATCCCAACACCATCCAGGACTATTTACAGCAGCTGCCTGGAAACTTCCCCTACAGAGAAGAGATCATGTCCATGAGCAACGTGTGTCTGGTCCTCATTGTCCTTCTTTTTATCACCAGCATCCTTGCCTTTAAGGCTTATTTgatgatgtgtgtgtggagctgctACAGATATGTGAGTGGTAGAAGTGCTGCAGATGTCCTGGTGTATGTCACCAATACTAATGACACCACGGTCCTGCTGCCCCAGTATGATGACACAATGGCCCTTCCAGCCAAGCAAGCTCAACCTCCATTCATGCTGGCCTGAGTTCATTGGGTGTAAAGTTCTGAATCTATGTAATAAGACATCCATTCAGCATTATAATAATACTGGTACATGgtgctccagaaaaaaaaaacatttcagagtCCTTAGACCTCTTCATACTAAGAACACTTTAGCTGATTCTGTTTTAGAGGTCTGACACAGACTGAATGTGTACTCTCCAGAGTATTTCACTATTcagatatacacatatatggtattaattattgatttttgaataattaataatcattttccTAATAGATTCCTCTGCAAAgcctgtttattgttaataggCTAGATGTTTTCCACAGACCAGCAGCCACCCCCTCAGTAACCAGATACGCAAACATAGAATACATATTAATGCtcatgtttatgtatttattatgtgATTCTGTGTGATGACTTTCTGATTATACTCTTATAGTAACTTCTTAAGCTGACTGCACTTTAGAAAAGATGATTAGTGATGAGTATCTGTCCCAAAGACGGACACGTTCTGTCTCACTCACTTGCACACTTTGCACTGATTTTGAACATTGGTTTTAATAATCCTGTAGTCGTTGTCTCAAGTGTAATACGTTGTTATTCTGCGTTTATTGATGTTGCTGTGATTTAATGGATTTATCTGGATACTTCTTTCTGTAAACTGGAAGGGAATAGTCACTGTGAAGGATCAGATTTTTGTAATAAACAGGTTGATCCATATTTGAACAGGGTAAAGGCTCCTGCTGCCCACAGTTTGTGATGTTTGTGTGATGTGATTCTAACTTGAGGTGTTTGACTACGTTTTtgtgaaataaactgttttaatctTAAAACATT

Function

symbol description
laptm4b Predicted to be located in cell projection; multivesicular body membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Is expressed in epiphysis; otic placode; otic vesicle; and retina. Orthologous to human LAPTM4B (lysosomal protein transmembrane 4 beta).

NR:

description
lysosomal-associated transmembrane protein 4B-like

GO: NA

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234719.3 True 1644 mRNA 0.43 7 8645276 8656874

Neighbor

gene id symbol gene type direction distance location
matn2 NA coding downstream 844 8630223 ~ 8644432 (-)
LOC103038077 NA coding downstream 21133 8610142 ~ 8624143 (-)
pop1 NA coding downstream 41324 8589192 ~ 8603952 (-)
kcns2 kcns2,LOC102789903 coding downstream 72124 8569446 ~ 8573152 (-)
osr2 osr2,LOC106591507 coding downstream 140799 8500453 ~ 8504477 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding upstream 90011 8746885 ~ 8776247 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding upstream 156150 8813024 ~ 8831921 (-)
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding upstream 217008 8873882 ~ 8877125 (-)
LOC103047134 LOC103047134 coding upstream 318584 8975458 ~ 8979618 (-)
txndc5 txndc5,LOC107730007 coding upstream 414508 9071382 ~ 9084286 (-)
G17326 hus1 non-coding downstream 485891 8148967 ~ 8159385 (-)
G17313 NA non-coding downstream 588987 8056033 ~ 8056289 (-)
G17305 NA non-coding downstream 652849 7991767 ~ 7992427 (-)
G17236 NA non-coding downstream 897326 7686941 ~ 7747950 (-)
G17240 NA non-coding downstream 976161 7656754 ~ 7669115 (-)
G17514 NA non-coding upstream 12116 8668990 ~ 8673177 (-)
G17532 NA non-coding upstream 89506 8746380 ~ 8788287 (-)
G17536 NA non-coding upstream 136991 8793865 ~ 8811479 (-)
G17558 NA non-coding upstream 255096 8911970 ~ 8960840 (-)
G17585 NA non-coding upstream 327487 8984361 ~ 8985654 (-)
LOC103026934 ahrr,LOC108431062 other downstream 637656 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2101001 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2282271 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2534993 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 2544932 6083120 ~ 6100344 (-)
LOC111188216 NA other upstream 204260 8861134 ~ 8886317 (-)
G17638 NA other upstream 905553 9562427 ~ 9562725 (-)
mak mak other upstream 1338271 9995145 ~ 10009151 (-)
G17792 NA other upstream 1589801 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 2359155 11016029 ~ 11080184 (-)

Expression


Co-expression Network