G17240


Basic Information

Item Value
gene id G17240
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7656754 ~ 7669115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23263
CAATAATCCAGTTTCTCAGATTATCAtgctatatttttaaaaatcaacttATTGATATTCAATTACACCTAACAGATAAAAGTGTTTTGGTATGTAAATGCCTTCAGACTCAGCCTTATTTTCCAACTCTGCTCCTCTCACCTGTCTTTATCATGGCTGTCCTCTGTTTGGAGTTCAATGGTAGGTGGCTCCCAGACGGGGCCTGTGTTGCACACAGGAGAAACATCACCCCCATCTGACAAAGACGGGAGACTGGTTTGGCTGGTGTTCATAACATTATCAGTCTGAGTGGATTCAGGGCTGGTAGTTATGACTGGGTTGCTGGGTGGCACCTCACTGGCCTCTATCACTTGAACAGGTACTTGGCTTGTCACACCTGGCTTGGGAGGCTTTTCACCTTCGACTGGTGGCTTTGGCTCATTGCCGCCATAAAACCACCCAGGGAGTCGCCGAACAGGCTTGCTTTCATCTTTCTTTCCAGGCTTCTTTCTCATAATCTTAAACCCTCTGGACTTCTTGCTGTCTGGAGCTTTGGCTTTCACTCCCAGTTGCTTCATGTAGTAAGCCACTGCATCAAAGATGGCAGAGAATTTGTCCTCATCTGCAACGATTGCGGGGTTTGCATCTGATAACTTCTCGTACAGCATCTCAGCCACTGCTTTCTCCTTCATTTCCCTGGGTACTCGGTCAGTAGGGTAGTGATTCTCCACCTGACTGAGCTCCTGTTCATTAGGGGTCATTCCCATCATCCTCTTCTGCCTGAAGTCGTCCAGCTGTCTCAGCACCTCTAGGCACTGCATATTCTGCATTTCCTGAGCGTAGCGcctctgctggtcctcgccgaTCAGTTCAGGACGAGTACGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23263 True 865 lncRNA 0.35 8 7656754 7669115

Neighbor

gene id symbol gene type direction distance location
LOC103024588 LOC103024588,LOC108431074 coding downstream 277540 7373857 ~ 7379214 (-)
LOC103024076 NA coding downstream 288192 7338760 ~ 7368562 (-)
ptpn3 ptpn3,LOC108256378,LOC107687805,LOC107706310,LOC107595851,LOC107723490,LOC107657714,LOC107593679 coding downstream 371024 7239009 ~ 7285730 (-)
LOC103025538 epb41l4b,LOC108443285,LOC108256379,LOC107706320 coding downstream 420352 7179416 ~ 7236402 (-)
virma kiaa1429,LOC107706278,LOC107723452,LOC107595823,LOC107593674 coding downstream 517628 7112050 ~ 7139126 (-)
mrpl17 mrpl17,LOC107657704 coding upstream 165130 7834245 ~ 7839474 (-)
LOC103033961 LOC108431065 coding upstream 190909 7860024 ~ 7872013 (-)
LOC103029950 NA coding upstream 207919 7877034 ~ 7882211 (-)
LOC103027725 NA coding upstream 218872 7887987 ~ 7909267 (-)
anks6 anks6,LOC103376383 coding upstream 349033 8018148 ~ 8036248 (-)
G17187 NA non-coding downstream 145668 7510637 ~ 7511086 (-)
G17181 NA non-coding downstream 220134 7436376 ~ 7436620 (-)
G17134 NA non-coding downstream 284266 7370368 ~ 7372488 (-)
G17144 LOC108431076,LOC108256683 non-coding downstream 334446 7321499 ~ 7322308 (-)
G17123 NA non-coding downstream 446010 7206012 ~ 7210744 (-)
G17236 NA non-coding upstream 17826 7686941 ~ 7747950 (-)
G17305 NA non-coding upstream 322652 7991767 ~ 7992427 (-)
G17313 NA non-coding upstream 386918 8056033 ~ 8056289 (-)
G17326 hus1 non-coding upstream 479852 8148967 ~ 8159385 (-)
G17514 NA non-coding upstream 999875 8668990 ~ 8673177 (-)
sec61b sec61b,LOC102796100 other downstream 1112479 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 1293749 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 1546471 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 1556410 6083120 ~ 6100344 (-)
G16709 NA other downstream 1956267 5697045 ~ 5700487 (-)
LOC103026934 ahrr,LOC108431062 other upstream 255814 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 1192019 8861134 ~ 8886317 (-)
G17638 NA other upstream 1893312 9562427 ~ 9562725 (-)
mak mak other upstream 2326030 9995145 ~ 10009151 (-)
G17792 NA other upstream 2577560 10246675 ~ 10247318 (-)

Expression


Co-expression Network