mrpl17 (mrpl17,LOC107657704)


Basic Information

Item Value
gene id mrpl17
gene name mrpl17,LOC107657704
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7834245 ~ 7839474 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232433.3
ggCGGCCTGTCGGCGGAAGTTTTGTACAGTGTCGGAGTTTGCCCGCAATGCTCTGTAGGACACATGTGGAGGATGCAGTGCTTGAGTTAAACCCGCAGTTTTTAGTGTAAATCTGCAGTTTAGAGCTGATTTCTGGGTCAGTGCTGGTCTGTACCGTATTATAGAGGTCTGTGTATCTGGGCCCGGGCGGTAGTTTCTCTGTGAGGGGGCTATAGAGGGAGTTAATCGGCTGTGAATCAGGATGCGGCTCACTCTCAGAGCGCTGATCTCTCATGGACGGGTCGCCCGCAGGATGGGTCTCGGACCCGAGTCCAGAATCAACATGCTGAGGAACATCCTCACCGGCCTGGTCCGGCACGAGCGGATAGAGACCACCCGGGTCCGAGCCGACGAGGTCCAGTTCTACGCTGAGAAGTTAATTGACTATGCCAAAAAAGGAGACACTAACGAAAAGTCGATGAAAATGGCAGATTTTTGGCTTACGGAGAAAGATTTGATTCCAAAGCTGTTTAAAGTTCTCGCGCCAAGATTTGAAAACCAGCCCAGTGGATATACACGAATGGCACGTCTGCCTAACAGAGAGAACCTGGACCGCGCTGCTATGGCTGTCATTGAGTACAAAGGCAACCCTTTCCCACCTCTGTTTCCTGTTAAACAAGACAATGAACTCAACCTTGTAAACCAACTTTTAAAAGGCTACAGAGAAGAACAGGCCCAACTGAGCGCAACTGAAAGCAAGTCATAAAATACTTTTGTTATTTACCTTATTATTCAGctgtgtttgtaaaaaaaaaatcatgttcttCTAATTAATAAACTAAGAAAGCTC

Function

symbol description
mrpl17 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL17 (mitochondrial ribosomal protein L17).

NR:

description
PREDICTED: 39S ribosomal protein L17, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02879 RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232433.3 True 829 mRNA 0.48 3 7834245 7839474

Neighbor

gene id symbol gene type direction distance location
LOC103024588 LOC103024588,LOC108431074 coding downstream 455031 7373857 ~ 7379214 (-)
LOC103024076 NA coding downstream 465683 7338760 ~ 7368562 (-)
ptpn3 ptpn3,LOC108256378,LOC107687805,LOC107706310,LOC107595851,LOC107723490,LOC107657714,LOC107593679 coding downstream 548515 7239009 ~ 7285730 (-)
LOC103025538 epb41l4b,LOC108443285,LOC108256379,LOC107706320 coding downstream 597843 7179416 ~ 7236402 (-)
virma kiaa1429,LOC107706278,LOC107723452,LOC107595823,LOC107593674 coding downstream 695119 7112050 ~ 7139126 (-)
LOC103033961 LOC108431065 coding upstream 20550 7860024 ~ 7872013 (-)
LOC103029950 NA coding upstream 37560 7877034 ~ 7882211 (-)
LOC103027725 NA coding upstream 48513 7887987 ~ 7909267 (-)
anks6 anks6,LOC103376383 coding upstream 178674 8018148 ~ 8036248 (-)
LOC103026338 LOC103026338,LOC108414855 coding upstream 241251 8080725 ~ 8142026 (-)
G17236 NA non-coding downstream 86295 7686941 ~ 7747950 (-)
G17237 NA non-coding downstream 142556 7607954 ~ 7691689 (-)
G17240 NA non-coding downstream 165130 7656754 ~ 7669115 (-)
G17187 NA non-coding downstream 323159 7510637 ~ 7511086 (-)
G17181 NA non-coding downstream 397625 7436376 ~ 7436620 (-)
G17305 NA non-coding upstream 152293 7991767 ~ 7992427 (-)
G17313 NA non-coding upstream 216559 8056033 ~ 8056289 (-)
G17326 hus1 non-coding upstream 309493 8148967 ~ 8159385 (-)
G17514 NA non-coding upstream 829516 8668990 ~ 8673177 (-)
G17532 NA non-coding upstream 906906 8746380 ~ 8788287 (-)
sec61b sec61b,LOC102796100 other downstream 1289970 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 1471240 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 1723962 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 1733901 6083120 ~ 6100344 (-)
G16709 NA other downstream 2133758 5697045 ~ 5700487 (-)
LOC103026934 ahrr,LOC108431062 other upstream 85455 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 1021660 8861134 ~ 8886317 (-)
G17638 NA other upstream 1722953 9562427 ~ 9562725 (-)
mak mak other upstream 2155671 9995145 ~ 10009151 (-)
G17792 NA other upstream 2407201 10246675 ~ 10247318 (-)

Expression


Co-expression Network