anks6 (anks6,LOC103376383)


Basic Information

Item Value
gene id anks6
gene name anks6,LOC103376383
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8018148 ~ 8036248 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232424.3
CGTAAACACCATCTATTATCATGTTGTTTAAGCCTGGGCCGCCAGTAAAcccagtaaaaacagtaaaccGCTCAgtgggagaagaagaagaagaagttttGTGGTGGTGGACGAGGAGGAGAAGTTTTCCCGGAGCTCAGGATGAATTTCGGGGTTCCGGCGAATTCGCTGCTGCTGTTCCGCGCCTGCGACGAGGGAGACTACGACAGCGCCAAGCGGATTCTGGAGCACCCCGGGGGCCGAGTCGGGAAGGCAGTCCCGCAGCCGCCTGGACTCGGTCTCGGAGTGCAGCGTGGACGCGGTGCGGGCCGGGCTGCCGCGGTACCGGTGGACTGCACGGATGAAGAGGGGAACACGGCCCTGCACTTCGCCTCCGCCAGCGGACACGAACAGCTGGTGCGGTTCCTGCTCCGGAAAGGGGCGTCCGTGGACAGCCGGAACAACTACGGCTGGACCCCGCTCATGCAGGCGGCGAGATTTGGTCATCTAAACGTGGCTCATATCCTGCTGGAGAATGGAGCGGAGATCAACGGCAGGAACCGCTTGGGTGCCAGCGTGCTCACCATGGCCGTGCGAGGAGGCCACGCGCACGTCGCTAAACTCCTTCTAGAGAACGGAGCTTTTGTGGATGATTTTGACCACCTCTCTGCAGTGGAGGGCAATGCTAACGGGAACAATAGCAACCATAGTGACAATGGGAAGAACTTCCTAGATATCACACCATTGTTATGTAGTGCTCAGCACGGCTTTGAAGCCATGGTGAGACTGCTGTTAGAATGGGGGGCTGATGTGAACTTTTCTCAGAAGACCACGGGATGGAGCGCGCTGATGTTAGCTACTTTAAGTGGAAAGGCTAGCATAGCACAGCTGCTGGTAGAGCGAGGTGCTGATCCTGATCACCTGAATGTACTCTCCAAAACTGCGTTTGAAGTGGCTCTGCAGCTTAAACATAAAGAGGTGAAGAGTTACCTCGACTCCATCACCACAGTTCGTCCACAACCAGATGCCGAGAAGAGGAGACCTGATGTTTTCAGTGCCCTAAAGCTAGGAAATGCTCAGCTGGTGAAGGAGATATTAGAGGAGGATCCATCGCAGGTGAACTTGGCTAATGCAGATGGGGCATCTCCTCTAATGATAGCAGCAGTGAGTGGACAGCAGGAGGTGGTGCAGTTACTGGTGGAGAAGAATGCAGATGTGGACAAACAGGATGGGGTCCATGGCTGGACAGCTCTTATGCAGGCTACGTATCATGGgaATAAAGATGTGGTGAAGTATCTCCTGAATCAGGGTGCTGATGTGAATCTGAGAGCCAAGAACGGATATACAGCCTTTGACCTTGTCATGCTGTTAAATGACCcagacACTGAGTTAGTGAGGCTACTTGCTTCCGTTTGTATGACTGTGGATAAAGACAAGAGTAAACATAGAAGCAAGAGGCTTACCAAGAAACGCTTGTCTGCTAGTGTGCCAGAACCACCAGATGATAAGGGTGGATTGAAGTCATGGTGGAATCGAATGTCCAATCGCTTTCGCAAGCTGAAGCTTACTCACACGCTGAGGCATGGCCTCTCCCCCAATCGTCTGGCTCCGTTCCCTGATGACCCAGAGGTTCCACTGGATGCTACCATGAGGGCAGAGTGTAGGACAGATGCAAACAGCTCTGAGACCAGCAGTACAGTAGCACCTCCTGCTGGAGCCACTGCCAATGACATCACTGTTGCATGGAGCgcaaagaacaaagaaagtGGTCTTGGAAGAACCAACAGTGAGAAAAATGACGTACTTATGATCACAATGTTAAGAAATGGTGCACCTCTGACCCGTTTGCCCAATGACAAGCTGAAGGCTGTTATCCCCCCTTTCTTACCTCCGTCCAACTTTGAGCCGTGGAACTCGGACCGCTCACGTACGATGAAGGAGGGAGGCAAGACCAATGAGCAGTCTCGTCTACCCATGCATCAGAGACCCAGCAAAGCCAACTTTAACAGCAGTGGAAACTCTGATATTacGAGCATTAGTCGAGTCGTGAACAGATCTATGAAGTTTCCCACTATCAGTAAGGTGCCGTCCTCTTCTCCCTCCAACTCCGGCAACTATAACTCTCCTCACTCGTCCGGAGGATCCAATGGAGTGGGAGTGGTGAACCGCCATGCATCAGACTCGCATAATCGCTCAGGAGGCAGTGCATCTGACAGTGTGTTATCTCAGATTGCTGCTCAGAGGAAGAGGGCTGCAGGTCTGCTTGACGTTAAAGGTCCGGCCCCAGAGACGCCCAGCCTGGCTCCCACACCGCTGCCAACAGGGCCTGATGCTAGTCTGACCAGCGTACATAGCAACCCCAGCCTGGTGCCCAGTGACTTCCACTCCAGACGGGTGGACCTAAAGAAGAGGCCCCAGTCTGGAAACTCCTCCACCTCTAAAAGCACGTCGTCCACAGTGACCCCATGTCCATCCCCAACCCCCAAACCTCCCACTGGAGACACATTCTCTTCAGCTTCTTCTCAGCCaagatccaaaagcagtggtgGATCCAGCAGTGGCACCATAACTGATGAGGATGAACTGTCTGGTATACTGAGGAAGCTTTCTCTGGAAAAATATCAGCCCATCTTTGAAGAGCAGGAGGTAGACATGGAAGCATTTTTAACTCTGACTGATGGAGATCTGAAGGAGCTGGGGATTAAAACAGATGGACCTAGACAACAGATCTTAGCAGCCATCTCTGAACTGAATGCTGGCAAGgggagagaaagacagttaCTGCAGGAAACTATCCACAATTTCCAGTCTTCATTTGGAAGCAGTGCCAGTAACCACCGACCTGCAGGATATTCACGATCTCCCACAGGTTGGGCCAGGCATCAGCTTCACACCCCTAACAAGAGGTAACACATCTGGACAGGTGGAGAGTGTCAGAAAGGACTGTTACAGTGTGCAATTGCGAATGTGCCAAAAAAGAGAGATCTCCTAAACTATGTTCACCTCCATTAAAACCCTAAATGTTTGCACTGTCATACCTAGATACGCCACCAGAGGACGCTGAAATGTCTAAAATGAAATGACCTGGAGCGCTGGTTGAGAGGTCACTTCAGGATCTCTAAAAATACATAGTCGTATTTGGGTCAAgattttttccctctcttttgcACGAGTGGGCTGTGAGTGATGTGAATGTCTAAATGAGGGGAAGGGAAATGGAAGTGTTTCCAAATCATGTTTTTGGTTTATGTGAGGTTAGACCATGCTGAGCATGCTCTAAATTGAAGGATTTTGAAGGGAATCACCACCATATAGTATAAGAGTGCTTTATGGTAATGCACGTTTTggtcactttttaaaattttaacaaaTGAACATGTGTTAGTGCTGCAGGAGACGATGAGGATGGTCATTGTCTCAATTCCGTCACAGTATAGTACGAGTTCTATACCAAAAGAAACAGAGGaattaaaaaagaatttaattttaaaaggtGGAATATATCGGTACCACGTTAAAATAAGGCTTCTTTATGAATGTTTATAAATAGTCTATgagggagtttattaatggttaataattaggttttAAATACTTTACAAACCATTATTGAGTAGTAACAACATATAAATTCTCCTTTTTTCCCAATCAGTCAGAATTATAAAAtcatctaataaaataatatagaaagtcagtttagttagttgttaaatgttattttatgttaaaatacaccacattatgattattggATAAATGATTATTCTGGGTAGTTAAAGTTAATGACAGATATGTTATTAACAGATATGTTGTtgatgactgatggaaaagacaaagttaAATAAGCGtccagaaagatctgaggtttaacagtataaatgaaagttaaatcactatttggcaaacaacaggccaCTGTTGTCCTTTTAATGtctgtgttgtaactgcttattaataattgaaaactatttacaacctaattaataacataaatgtttataaactctttataaatgagccttattttaaagtggtaccagtaTATCTTATCTATGAGGCTAAAAAAAGGTGCAAGGTACTGACATCATGTAAGGTACTGACAAACAGAGCAAACGATGAAGCAAAAGAATATCTatgatttatcttgtttgtgatgtaatttaattaattgtagTAGTCATACAATTGTTTTGTATGGTAACAGGTTACAGGAGAATGataaaatgtcttattttttaaGTAGAAGACAATGTGAAAAGATGTCATTCATTCCATGTTGTTCAACATTTCTATTCCATCATGAtcttttgacacaatgtaaagaatagTGTCAGATTTGTatgttaaaaagtgaaaaatggagAAATTCCATGAAACCAATGAAATACTGACACATGCTTGGAAATTTTGTAGCTGATGACAATGTGTTACCTAAGAATTCAaagaaataacattttataataaggtttcctattagggctgcacaatatatggTTTCAGCATCATCATCGCAATGTAAGCATGTCTCAGAAAATTCATATCACAGGATGTccaataagataaaataaattcatttcAATTGGACTGTTCTCATTTGCCAGAACTTCTCAACCAGAGGGAGATTACGTCTGCCCCAAATCTTTTATTTTCAATCTTTGATACACAGAgggaattattaatattgtgacATGTTACATCTTTGACTTCTGTTACTTCTAGTATGAAATATGCAATATAAAcctttggaaaaataaataagagaccacttaaaaatgatgagtttctttgattttatcaaattgaaaacctttggaatataatcaagaggaaggt

Function

symbol description
anks6 Acts upstream of or within pronephros development. Predicted to be located in cilium. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in nephronophthisis 16. Orthologous to human ANKS6 (ankyrin repeat and sterile alpha motif domain containing 6).

NR:

description
PREDICTED: ankyrin repeat and SAM domain-containing protein 6 isoform X2

GO: NA

KEGG:

id description
K21415 ANKS6; ankyrin repeat and SAM domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232424.3 True 4812 mRNA 0.44 17 8018148 8036248

Neighbor

gene id symbol gene type direction distance location
LOC103027725 NA coding downstream 108881 7887987 ~ 7909267 (-)
LOC103029950 NA coding downstream 135937 7877034 ~ 7882211 (-)
LOC103033961 LOC108431065 coding downstream 146135 7860024 ~ 7872013 (-)
mrpl17 mrpl17,LOC107657704 coding downstream 178674 7834245 ~ 7839474 (-)
LOC103024588 LOC103024588,LOC108431074 coding downstream 638934 7373857 ~ 7379214 (-)
LOC103026338 LOC103026338,LOC108414855 coding upstream 44477 8080725 ~ 8142026 (-)
vps13b vps13b coding upstream 149780 8186028 ~ 8495751 (-)
osr2 osr2,LOC106591507 coding upstream 464205 8500453 ~ 8504477 (-)
kcns2 kcns2,LOC102789903 coding upstream 533198 8569446 ~ 8573152 (-)
pop1 NA coding upstream 552944 8589192 ~ 8603952 (-)
G17305 NA non-coding downstream 25721 7991767 ~ 7992427 (-)
G17236 NA non-coding downstream 270198 7686941 ~ 7747950 (-)
G17237 NA non-coding downstream 326459 7607954 ~ 7691689 (-)
G17240 NA non-coding downstream 349033 7656754 ~ 7669115 (-)
G17187 NA non-coding downstream 507062 7510637 ~ 7511086 (-)
G17313 NA non-coding upstream 19785 8056033 ~ 8056289 (-)
G17326 hus1 non-coding upstream 112719 8148967 ~ 8159385 (-)
G17514 NA non-coding upstream 632742 8668990 ~ 8673177 (-)
G17532 NA non-coding upstream 710132 8746380 ~ 8788287 (-)
G17536 NA non-coding upstream 757617 8793865 ~ 8811479 (-)
LOC103026934 ahrr,LOC108431062 other downstream 10528 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 1473873 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 1655143 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 1907865 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 1917804 6083120 ~ 6100344 (-)
LOC111188216 NA other upstream 824886 8861134 ~ 8886317 (-)
G17638 NA other upstream 1526179 9562427 ~ 9562725 (-)
mak mak other upstream 1958897 9995145 ~ 10009151 (-)
G17792 NA other upstream 2210427 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 2979781 11016029 ~ 11080184 (-)

Expression


Co-expression Network