G17187


Basic Information

Item Value
gene id G17187
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7510637 ~ 7511086 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23182
gtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtctgctccagctgttcaagcctccgtgtcagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccgcgccgccagcaccagctcccgctgccagagtcgccgcgccgccagcaccagctcccgctgccagagtcgccgcgccgccagcaccagctcccgctgcccgagtcgccacCCCACCGGTTCCTGCTCC

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU23182 True 450 lncRNA 0.40 1 7510637 7511086

Neighbor

gene id symbol gene type direction distance location
LOC103024588 LOC103024588,LOC108431074 coding downstream 131423 7373857 ~ 7379214 (-)
LOC103024076 NA coding downstream 142075 7338760 ~ 7368562 (-)
ptpn3 ptpn3,LOC108256378,LOC107687805,LOC107706310,LOC107595851,LOC107723490,LOC107657714,LOC107593679 coding downstream 224907 7239009 ~ 7285730 (-)
LOC103025538 epb41l4b,LOC108443285,LOC108256379,LOC107706320 coding downstream 274235 7179416 ~ 7236402 (-)
virma kiaa1429,LOC107706278,LOC107723452,LOC107595823,LOC107593674 coding downstream 371511 7112050 ~ 7139126 (-)
mrpl17 mrpl17,LOC107657704 coding upstream 323159 7834245 ~ 7839474 (-)
LOC103033961 LOC108431065 coding upstream 348938 7860024 ~ 7872013 (-)
LOC103029950 NA coding upstream 365948 7877034 ~ 7882211 (-)
LOC103027725 NA coding upstream 376901 7887987 ~ 7909267 (-)
anks6 anks6,LOC103376383 coding upstream 507062 8018148 ~ 8036248 (-)
G17181 NA non-coding downstream 74017 7436376 ~ 7436620 (-)
G17134 NA non-coding downstream 138149 7370368 ~ 7372488 (-)
G17144 LOC108431076,LOC108256683 non-coding downstream 188329 7321499 ~ 7322308 (-)
G17123 NA non-coding downstream 299893 7206012 ~ 7210744 (-)
G17122 NA non-coding downstream 322782 7186865 ~ 7187855 (-)
G17237 NA non-coding upstream 96868 7607954 ~ 7691689 (-)
G17240 NA non-coding upstream 145668 7656754 ~ 7669115 (-)
G17236 NA non-coding upstream 175855 7686941 ~ 7747950 (-)
G17305 NA non-coding upstream 480681 7991767 ~ 7992427 (-)
G17313 NA non-coding upstream 544947 8056033 ~ 8056289 (-)
sec61b sec61b,LOC102796100 other downstream 966362 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 1147632 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 1400354 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 1410293 6083120 ~ 6100344 (-)
G16709 NA other downstream 1810150 5697045 ~ 5700487 (-)
LOC103026934 ahrr,LOC108431062 other upstream 413843 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 1350048 8861134 ~ 8886317 (-)
G17638 NA other upstream 2051341 9562427 ~ 9562725 (-)
mak mak other upstream 2484059 9995145 ~ 10009151 (-)
G17792 NA other upstream 2735589 10246675 ~ 10247318 (-)

Expression


Co-expression Network