G17144 (LOC108431076,LOC108256683)


Basic Information

Item Value
gene id G17144
gene name LOC108431076,LOC108256683
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7321499 ~ 7322308 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23132
GACAATTAAGCCAATAATACATCAGTATGCAAGTCTTGCTTTTCTGTAagtttgttattatatatacatttagttTTTACCTCTTCTGTGTTCCACTTGGCCACAGTCTTGGCATTAAGGCCTAAGGCTTCAGGCAGCAGTTTGCCGTGCTTTTCCCAACATTGCTGAAACTTGGGCGGTTCCCATCCGCAGAACACAGAGTCATGCAAGAACTGCTGCAGAGAGTCTTTTCCATTTCCTTCATGCTTCACCTGATGGGGCTTCACACATTTGGCTGCAGTGGTGGTAGTTCTTGCTGGCAGTGGGTTGTCTGGGCTTTCCGTGGGCTCTAGGCTGTTCCCAGTGGGAGTATGAGCAGGTGTTTGATTAAGTGACTCAGTCCGACGATGTCTTGGAGGTCCACTAAGAGTGACCGGTCTCTCTCCGCTTAGCCTGTCCGGTACAAGCCCTTCTTTATTTAGGTTCAGTTCTGAGTATGGACAGCTTACAGCCCTAACATAAACAAATAGACAGCCTTTCATTGTTAAATCGTCATGTTAAAaaagcaatcaaataaaaataatatg

Function

NR:

description
PREDICTED: lethal(3)malignant brain tumor-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23132 True 566 lncRNA 0.45 3 7321499 7322308

Neighbor

gene id symbol gene type direction distance location
ptpn3 ptpn3,LOC108256378,LOC107687805,LOC107706310,LOC107595851,LOC107723490,LOC107657714,LOC107593679 coding downstream 35769 7239009 ~ 7285730 (-)
LOC103025538 epb41l4b,LOC108443285,LOC108256379,LOC107706320 coding downstream 85097 7179416 ~ 7236402 (-)
virma kiaa1429,LOC107706278,LOC107723452,LOC107595823,LOC107593674 coding downstream 182373 7112050 ~ 7139126 (-)
rad54b rad54b coding downstream 222138 7075803 ~ 7099361 (-)
fsbp fsbp,LOC107593680,LOC107723453,LOC107687811,LOC107595917,LOC105897825 coding downstream 227992 7089580 ~ 7093507 (-)
LOC103024076 NA coding upstream 16452 7338760 ~ 7368562 (-)
LOC103024588 LOC103024588,LOC108431074 coding upstream 51549 7373857 ~ 7379214 (-)
mrpl17 mrpl17,LOC107657704 coding upstream 511937 7834245 ~ 7839474 (-)
LOC103033961 LOC108431065 coding upstream 537716 7860024 ~ 7872013 (-)
LOC103029950 NA coding upstream 554726 7877034 ~ 7882211 (-)
G17123 NA non-coding downstream 110755 7206012 ~ 7210744 (-)
G17122 NA non-coding downstream 133644 7186865 ~ 7187855 (-)
G17121 NA non-coding downstream 134698 7186193 ~ 7186801 (-)
G17117 esrp1,LOC107706288 non-coding downstream 165597 7148577 ~ 7155902 (-)
G17093 NA non-coding downstream 305655 7012003 ~ 7015844 (-)
G17134 NA non-coding upstream 48060 7370368 ~ 7372488 (-)
G17181 NA non-coding upstream 114068 7436376 ~ 7436620 (-)
G17187 NA non-coding upstream 188329 7510637 ~ 7511086 (-)
G17237 NA non-coding upstream 285646 7607954 ~ 7691689 (-)
G17240 NA non-coding upstream 334446 7656754 ~ 7669115 (-)
sec61b sec61b,LOC102796100 other downstream 777224 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 958494 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 1211216 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 1221155 6083120 ~ 6100344 (-)
G16709 NA other downstream 1621012 5697045 ~ 5700487 (-)
LOC103026934 ahrr,LOC108431062 other upstream 602621 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 1538826 8861134 ~ 8886317 (-)
G17638 NA other upstream 2240119 9562427 ~ 9562725 (-)
mak mak other upstream 2672837 9995145 ~ 10009151 (-)
G17792 NA other upstream 2924367 10246675 ~ 10247318 (-)

Expression


Co-expression Network