LOC111191940


Basic Information

Item Value
gene id LOC111191940
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6354945 ~ 6363005 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22828
CtccgaggaggaagaggagctctaccccgcaccagcccgtactccattgccgtttcccccaggggctGTACTCTATccgcgctccaagaagcacgcggctgaggctccacgccccgtgactcccgtggctcagccgctccccgagacttcagcggcggccgcgccgctccccgagactacagcggcagcggcagcgccgctctctgaagctccagctaagctagctagcctgctagctccACCGCACTCTCCagctcggccggcttccagctctccagcccggccgacttccagcactccagctcgaccggcttccagctctccagcccggccgacttccagcactccagcgcggccggcttccagctctccagcccggccgacttccaaCACTCCAGCTCGGCAGGCTTCCAGCTcaccagcccggccggcttccagatCCTCGACTCCGGCTCTGgaagcaagctccggtccggtGTTTACAACCACGCCCACTGCTGAATCTGCGGCTCCAGTCCGGGTCTTggcggcagccgcactctcaGCTCCCGCTGAAGCGGCTTTTTCGCCAGCGGTGCCAGCCGCCCCCAAGCCCGCGGTGCCAGCCGCCTCCACGTCAGCGGTGCCTGCCGCGCTCACgccagcaggacccaccgcctctgtttcagcgctgcccgcggctccggccgcctctgtttcagcgctgcccgcggctccggctgcctctgactctgtgcccgcggctccggccgcctctgactctgtacCCGCGGTGCCTGCCGCGCTCACgccagcaggacccaccgcctctgtttcagcgctgcccgcggctccggccgcctctgtttcagcgctgcccgcggctccggccgcctctgactctgtgcccgcggctccggccgcctctgactctgtgcccgctgcCTCCCCAGTTCACGTGCCTGGGCTACCCACCTCTGCTCCTGTGCCTACTCCCAGGTCACGAGCTCCTAGGatcgccgcgcctgctcaagctgcacccaccgcgcctgctcaagctgcacccgccgcgcctgctcgagcagcacccgctgccccagctcaggcaccagcagcacccgctgccccagctcaagcaccagcagcacccgctgctacagcctcagctccagcaccagcagctcccgctgctacagcctcagctccggcaccagcagcttcccgcTGCTAcaagcctcagctccggcaccagcagctccgctgctacagcctcagctccggcaccagcagctcccgctgctacagcctcagctccggcaccagcagctcccgttgctacagcctcagcttcGGCACCGGCAGTGCCTGCCACCtatgtggtacccactgctccTGACCTTGCACCCGCGGCCCCgtccgcctctgaccctgtacCCGCTCCCAGACCTTTGTTTGCCCCCAGGCCTGCTCCTAGGCCCCCGGATTGTACCCCTAgcactgtgcccaggctggctccccTGACTTTTCCACAGACATTTCCTTggacatttgccagtcctgggcaccctccTGTGTTTTTggtccccctgtctctccctgtcctggtccctgtatctgtgttcgttcctgttcctgtcccctGTGGTTTTTCTGTTCCCGTCCCAGTCACTGTATTTGTTTCTGTCCCCGTCACTGTTTTGGTTCcagttcccctgtccagttttgtCCAGTCtccgtctcctgttcggtcccctgtccagtcccagtctccgttccctgtc
>XM_022668159.1
ATGGTCCCTCCTCAAGGGCTTGCGGTGCTACCCCTGCAAACCGGGACTCCCCCCAGGGGGCAGAAGAGAAAGGATCGACCGAAAAATGGACGCAGCGAACCAGTGGACCGGCTCCAGGTTGGCGATTCACCACGCTTCATGCGGGACCCCGttcccctgtccagttttgCCCAGTCCCCGTCTTCTGTTCGGTCTGCTGCCCAGTCTCCGTCCCTGTCTagtgtccagccccctgtccagtctcagagCCCTCGGCAGGCTTCCAGCTcaccagcccggccggcttccagatCCTCGACTCCGGCTCTGgaagcaagctccggtccggtGTTTACAACCACGCCCACTGCTGAATCTGCGGCTCCAGTCCGGGTCTTggcggcagccgcactctcaGCTCCCGCTGAAGCGGCTTTTTCGCCAGCGGTGCCAGCCGCCCCCAAGCCCGCGGTGCCAGCCGCCTCCACGTCAGCGGTGCCTGCCGCGCTCACgccagcaggacccaccgcctctgtttcagcgctgcccgcggctccggccgcctctgtttcagcgctgcccgcggctccggctgcctctgactctgtgcccgcggctccggccgcctctgactctgtacCCGCGGTGCCTGCCGCGCTCACgccagcaggacccaccgcctctgtttcagcgctgcccgcggctccggccgcctctgtttcagcgctgcccgcggctccggccgcctctgactctgtgcccgcggctccggccgcctctgactctgtgcccgctgcCTCCCCAGTTCACGTGCCTGGGCTACCCACCTCTGCTCCTGTGCCTACTCCCAGGTCACGAGCTCCTAGGatcgccgcgcctgctcaagctgcacccaccgcgcctgctcaagctgcacccgccgcgcctgctcgagcagcacccgctctccgagctccggcaccagcagctcccgctgctacagcctcagctccggcaccagcagctcccgttgctacagcctcagcttcGGCACCGGCAGTGCCTGCCACCtatgtggtacccactgctccTGACCTTGCACCCGCGGCCCCgtccgcctctgaccctgtacCCGCTCCCAGACCTTTGTTTGCCCCCAGGCCTGCTCCTAGGCCCCCGGATTGTACCCCTAgcactgtgcccaggctggctccccTGACTTTTCCACAGACATTTCCTTggacatttgccagtcctgggcaccctccTGTGTTTTTggtccccctgtctctccctgtcctggtccctgtatctgtgttcgttcctgttcctgtcccctGTGGTTTTTCTGTTCCCGTCCCAGTCACTGTATTTGTTTCTGTCCCCGTCACTGTTTTGGTTCcagttcccctgtccagttttgtCCAGTCCCCGTCTTCTGTTCAGTCTGCTGCCCAGTCTCCGTCCCTGTCTagtgtccagccccctgtccagtctcagccccgtgtccagccctgtgtcctgtcccctgtccagtcccagtctccgttcccGAAGAAGGAGAACCCACAAGATTATCACATGGATACGGAGAAAACTAACTTTCTCCAACTTCTGACTGACGGTGGCCAGAGCAGGaactga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22828 True 1760 lncRNA 0.67 4 6356620 6358931
XM_022668159.1 False 1602 mRNA 0.65 7 6354945 6363005

Neighbor

gene id symbol gene type direction distance location
stx17 stx17 coding downstream 2848 6333311 ~ 6352097 (-)
invs invs coding downstream 63417 6235809 ~ 6291528 (-)
LOC103026216 NA coding downstream 170631 6172797 ~ 6184314 (-)
tmem67 tmem67 coding downstream 189136 6138052 ~ 6165809 (-)
LOC103024966 NA coding downstream 221391 6126286 ~ 6133554 (-)
nr4a3 nr4a3,LOC107596005,LOC107657725,LOC107687818,LOC107593690 coding upstream 5113 6368118 ~ 6411421 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 312071 6675076 ~ 6896820 (-)
trnat-ugu_7 NA coding upstream 560062 6923067 ~ 6923139 (-)
trnat-ugu_8 NA coding upstream 560238 6923243 ~ 6923315 (-)
trnat-ugu_9 NA coding upstream 560416 6923421 ~ 6923493 (-)
G16855 NA non-coding downstream 30599 6323480 ~ 6324346 (-)
G16886 tex10 non-coding downstream 163246 6191112 ~ 6191699 (-)
G16865 NA non-coding downstream 320042 6033217 ~ 6034903 (-)
G16851 NA non-coding downstream 502211 5852194 ~ 5852734 (-)
G16720 NA non-coding downstream 558688 5795668 ~ 5796257 (-)
G16914 NA non-coding upstream 88419 6451424 ~ 6452260 (-)
G16919 alg2,LOC107706186,LOC107595974,LOC107593685,LOC107723517,LOC107657723 non-coding upstream 182338 6545343 ~ 6548426 (-)
G16925 NA non-coding upstream 211839 6574844 ~ 6575316 (-)
G16926 NA non-coding upstream 213919 6576924 ~ 6577316 (-)
G16922 NA non-coding upstream 278142 6641147 ~ 6643087 (-)
LOC103024654 NA other downstream 244662 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 254601 6083120 ~ 6100344 (-)
G16709 NA other downstream 654458 5697045 ~ 5700487 (-)
G16568 NA other downstream 1535474 4814714 ~ 4819471 (-)
rad51d rad51d other downstream 2379768 3968924 ~ 3975177 (-)
sec61b sec61b,LOC102796100 other upstream 171854 6534859 ~ 6544275 (-)
LOC103026934 ahrr,LOC108431062 other upstream 1561924 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 2498129 8861134 ~ 8886317 (-)
G17638 NA other upstream 3199422 9562427 ~ 9562725 (-)
mak mak other upstream 3632140 9995145 ~ 10009151 (-)

Expression


Co-expression Network