G16855


Basic Information

Item Value
gene id G16855
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6323480 ~ 6324346 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22761
GCCTCCTAACCACTCATCCTTGTGGAATGGGCTGATATGAGACTACCGAGTCTGGATCGTAACGAGCGACGAGTCTGGAACCCCACAGTACATAAGAACACAGACTAATAAACACGTGTATCAaggctccctctctctcatacactctTCTGAcagacatacacatacacacacacacacacacatactcattcTTTCAattgcacactcacacactactgAGGACTGAAGGACTGAAGTTAGGGACCACAGGTTGACCGCAGATTCATCTGGAAGCTAATTTTCCATGATTCCACAGGCCTGCACGTGAGATCCAAACTGGTTTGAGCACGTGGACCCCAACAGGGAGGACCATCAATGTTTATCTGTCTATTTCTCTTCCTACAAAAAAAGTAGATAGACAAAAACCTAGGGGtcgacaaaaaaaaagaagaaaaaaaaagaaaaaaagaaaatccatatTTAATTTAGACGAGACTGACCCACTGAGCACATACATATTTACAAGCtccaaaaataaaagtaaaatcaatcttcctctcactctctttctctctccatctcaccaaaaagaaaaaaacttctctttttatccaaaataaaagttaagaaaataGAGGTGATGCAGCAGCAGCTGGCCGCCTGGGTTCTGGGCTGGGTGATGATACGGTAGCTTTGTCGTGGGTGGAGGTCACAGTTCGTCCCGGTCCCTGCTGAGGATGGTGTAGCGCGTCTCGCTGGGGGCCAGTTTCTGGAAGGAGCTCTCTGGGGGACTGCTGGCCACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22761 True 788 lncRNA 0.45 2 6323480 6324346

Neighbor

gene id symbol gene type direction distance location
invs invs coding downstream 31952 6235809 ~ 6291528 (-)
LOC103026216 NA coding downstream 139166 6172797 ~ 6184314 (-)
tmem67 tmem67 coding downstream 157671 6138052 ~ 6165809 (-)
LOC103024966 NA coding downstream 189926 6126286 ~ 6133554 (-)
LOC103025292 NA coding downstream 206928 6110935 ~ 6116552 (-)
stx17 stx17 coding upstream 8965 6333311 ~ 6352097 (-)
nr4a3 nr4a3,LOC107596005,LOC107657725,LOC107687818,LOC107593690 coding upstream 43772 6368118 ~ 6411421 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 350730 6675076 ~ 6896820 (-)
trnat-ugu_7 NA coding upstream 598721 6923067 ~ 6923139 (-)
trnat-ugu_8 NA coding upstream 598897 6923243 ~ 6923315 (-)
G16886 tex10 non-coding downstream 131781 6191112 ~ 6191699 (-)
G16865 NA non-coding downstream 288577 6033217 ~ 6034903 (-)
G16851 NA non-coding downstream 470746 5852194 ~ 5852734 (-)
G16720 NA non-coding downstream 527223 5795668 ~ 5796257 (-)
G16716 NA non-coding downstream 531369 5791486 ~ 5792111 (-)
G16914 NA non-coding upstream 127078 6451424 ~ 6452260 (-)
G16919 alg2,LOC107706186,LOC107595974,LOC107593685,LOC107723517,LOC107657723 non-coding upstream 220997 6545343 ~ 6548426 (-)
G16925 NA non-coding upstream 250498 6574844 ~ 6575316 (-)
G16926 NA non-coding upstream 252578 6576924 ~ 6577316 (-)
G16922 NA non-coding upstream 316801 6641147 ~ 6643087 (-)
LOC103024654 NA other downstream 213197 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 223136 6083120 ~ 6100344 (-)
G16709 NA other downstream 622993 5697045 ~ 5700487 (-)
G16568 NA other downstream 1504009 4814714 ~ 4819471 (-)
rad51d rad51d other downstream 2348303 3968924 ~ 3975177 (-)
LOC111191940 NA other upstream 30599 6354945 ~ 6363005 (-)
sec61b sec61b,LOC102796100 other upstream 210513 6534859 ~ 6544275 (-)
LOC103026934 ahrr,LOC108431062 other upstream 1600583 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 2536788 8861134 ~ 8886317 (-)
G17638 NA other upstream 3238081 9562427 ~ 9562725 (-)

Expression


Co-expression Network