G16919 (alg2,LOC107706186,LOC107595974,LOC107593685,LOC107723517,LOC107657723)


Basic Information

Item Value
gene id G16919
gene name alg2,LOC107706186,LOC107595974,LOC107593685,LOC107723517,LOC107657723
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6545343 ~ 6548426 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22848
agctcAATACTGAGGGGCTTTATATCCCTCAACCCCAGACCTGGCATAAGGCATGGTAGCAGTAggtaattttgttttctgcaAGACAAGCAGTATTTATGCATTTTCATGTCTGTGTCAGGCTAAAAAAGTAGTTGTATGCATTCATTAGGAGGGTGACCACAGACCAgagatgtataaagtactacagACCCAGATTTGAGAAAGTGCAagagctctattaaaaaaagtgacttgagtagaagttgaaggGTTTCTTGAGCACAAGAACGACAGGCTGAAGTATTCAACATTGTTTTTACTAAAGTATTTCagtagtttattataaaatgtagtactgaagtactcaaagtaaaaatacacaactgtgttgtgtagttattacaaaaaagagtggaaagttctcagagtgaaaggcagaacgGGAACAACATAATCGTAcaagatcagcttgatctcttAATTCACTCATAGTACTTTTCCACAAAAGTAATCTGGGTCTTAATGCTTTTCAGCGAACCAGTCcttgtttccaccagttttagtggaaccaccaaaACATCAAATCATTCGTCAACAACAGAGGGCGTTGCACAAAAGCAGTGAACAAAAGcgctgaagaacctagtattcttctgATCCCACTGGGAACAAACGTTCCTGGTtccggaacctacttttgttggaaaCACGACAAACCTGTTCAAAATTAGGTGGAAAAGTGCTGTTAGTGATGAGAcagtgacagtgcagagcatctaccgctctggctttagtgaaaATGTGGGTTTGTAATGAttcaaaatatgtagtgaagtaaaagtttaagtaggagaaaaaacaaatactccagtagatacagatacagcatttacTGTAAGTACTTAATACAGTAGTGAAGAAGTTCTACTTCATTACTATTCAATGCTATCTCTGGCCCAGACATTTCTCAGACAAGGGTTAAGCCAAGTTGTAGACAAGGGTCTGACCCTGTCTATtattaatttgaaataaaaaaaatacaaattctgaaaaaacttaattaattattgaTATAATACAGATGGTTAAAATGCTACATCTCCCACGTTTTAAGTGCAACAGATTTACCAATATATTAGGAGAAAGaataaaattcagaaaaaaaatctgaataaaattaaagtgttCAGTTACCTGGTCACAGAAGACAACATCAAACTCCTCTCCGCTCAGAAACACCAGATAAAACGCTACATAAATCATGCGCAGGTAAGCACAGATAGCATGGAAGTACCCAAACACACTGGTGGGTAACCAGTCGCCGGCACACACCACAGGCAGGTCCGGCGAGAGCGTCTCTGAGAAGCAGTGTTGTGGATCATAGTGTGCCGTCCAGATCTGAACACTGCAGCCGCGAGAGATCAACGCTACAGCAGCATCCACCACCAGCCGCTCCGCACCCCCGATACCCAGATCAGGGTGCAGGAACACCACCCGGACCAT
>TU22851
agctcAATACTGAGGGGCTTTATATCCCTCAACCCCAGACCTGGCATAAGGCATGGTAGCAGTAggtaattttgttttctgcaAGACAAGCAGTATTTATGCATTTTCATGTCTGTGTCAGGCTAAAAAAGTAGTTGTATGCATTCATTAGGAGGGTGACCACAGACCAgagatgtataaagtactacagACCCAGATTTGAGAAAGTGCAagagctctattaaaaaaagtgacttgagtagaagttgaaggGTTTCTTGAGCACAAGAACGACAGGCTGAAGTATTCAACATTGTTTTTACTAAAGTATTTCagtagtttattataaaatgtagtactgaagtactcaaagtaaaaatacacaactgtgttgtgtagttattacaaaaaagagtggaaagttctcagagtgaaaggcagaacgGGAACAACATAATCGTAcaagatcagcttgatctcttAATTCACTCATAGTACTTTTCCACAAAAGTAATCTGGGTCTTAATGCTTTTCAGCGAACCAGTCcttgtttccaccagttttagtggaaccaccaaaACATCAAATCATTCGTCAACAACAGAGGGCGTTGCACAAAAGCAGTGAACAAAAGcgctgaagaacctagtattcttctgATCCCACTGGGAACAAACGTTCCTGGTtccggaacctacttttgttggaaaCACGACAAACCTGTTCAAAATTAGGTGGAAAAGTGCTGTTAGTGATGAGAcagtgacagtgcagagcatctaccgctctggctttagtgaaaATGTGGGTTTGTAATGAttcaaaatatgtagtgaagtaaaagtttaagtaggagaaaaaacaaatactccagtagatacagatacagcatttacTGTAAGTACTTAATACAGTAGTGAAGAAGTTCTACTTCATTACTATTCAATGCTATCTCTGGCCCAGACATTTCTCAGACAAGGGTTAAGCCAAGTTGTAGACAAGGGTCTGACCCTGTCTATtattaatttgaaataaaaaaaatacaaattctgaaaaaacttaattaattattgaTATAATACAGATGGTTAAAATGCTACATCTCCCACGTTTTAAGTGCAACAGATTTACCAATATATTAGGAG

Function

symbol description
alg2 Predicted to enable alpha-1,3-mannosyltransferase activity and glycolipid mannosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein glycosylation in endoplasmic reticulum. Predicted to act upstream of or within protein glycosylation. Located in nucleus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ii and congenital myasthenic syndrome 14. Orthologous to human ALG2 (ALG2 alpha-1,3/1,6-mannosyltransferase).

NR:

description
PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22848 True 1485 lncRNA 0.35 2 6545343 6548426
TU22851 False 1124 lncRNA 0.41 2 6545704 6548426

Neighbor

gene id symbol gene type direction distance location
nr4a3 nr4a3,LOC107596005,LOC107657725,LOC107687818,LOC107593690 coding downstream 133922 6368118 ~ 6411421 (-)
stx17 stx17 coding downstream 193246 6333311 ~ 6352097 (-)
invs invs coding downstream 253815 6235809 ~ 6291528 (-)
LOC103026216 NA coding downstream 361029 6172797 ~ 6184314 (-)
tmem67 tmem67 coding downstream 379534 6138052 ~ 6165809 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 126650 6675076 ~ 6896820 (-)
trnat-ugu_7 NA coding upstream 374641 6923067 ~ 6923139 (-)
trnat-ugu_8 NA coding upstream 374817 6923243 ~ 6923315 (-)
trnat-ugu_9 NA coding upstream 374995 6923421 ~ 6923493 (-)
trnat-ugu_10 NA coding upstream 375173 6923599 ~ 6923671 (-)
G16914 NA non-coding downstream 93083 6451424 ~ 6452260 (-)
G16855 NA non-coding downstream 220997 6323480 ~ 6324346 (-)
G16886 tex10 non-coding downstream 353644 6191112 ~ 6191699 (-)
G16865 NA non-coding downstream 510440 6033217 ~ 6034903 (-)
G16851 NA non-coding downstream 692609 5852194 ~ 5852734 (-)
G16925 NA non-coding upstream 26418 6574844 ~ 6575316 (-)
G16926 NA non-coding upstream 28498 6576924 ~ 6577316 (-)
G16922 NA non-coding upstream 92721 6641147 ~ 6643087 (-)
G16921 NA non-coding upstream 94777 6643203 ~ 6645994 (-)
G16939 NA non-coding upstream 121643 6670069 ~ 6672756 (-)
sec61b sec61b,LOC102796100 other downstream 1068 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 182338 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 435060 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 444999 6083120 ~ 6100344 (-)
G16709 NA other downstream 844856 5697045 ~ 5700487 (-)
LOC103026934 ahrr,LOC108431062 other upstream 1376503 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 2312708 8861134 ~ 8886317 (-)
G17638 NA other upstream 3014001 9562427 ~ 9562725 (-)
mak mak other upstream 3446719 9995145 ~ 10009151 (-)
G17792 NA other upstream 3698249 10246675 ~ 10247318 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G141647 NA unknown NC_047603.1 CM018549.1 212948 ~ 235521 (+)
tiger barb (Puntius tetrazona) G113401 alg2,LOC107706186,LOC107723517,LOC107593685,LOC107657723 non-coding NC_056714.1 CM032083.1 16819395 ~ 16820019 (+)