LOC103026216


Basic Information

Item Value
gene id LOC103026216
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6172797 ~ 6184314 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679523.1
GGTCGTCTGGTTTTATATTAGCGGAGCTGAGGTTAGTGAAAGCGGTGAAGCTGTTTTTATCCATCTGGAAAATTAGCTCGCTTTGTTGTTCAGCTCAGATAAAAACAGGATCTCTGAAAGAATGGAAGGTCAACCGAATCctcagaagaaaaagaacttcGGGATGAAGAAAAAGCAGCAATTCCACAGTGGTGATATAGTGTTCACCAGAAATGGAGCAATTCAGACTCTTCCCGCCATGACCAAACGTCTGAAAACGATCACTGAGCCGGTTATTGGCTTGCAGTACGTATGGGAGTTTCGCAGCCCCACCAAGTCAGTTCCTCCTCATTACCAGTGCAAACTGTGCAAGGTCCAGCGTCTGCAGAATGAAATGGCTGCTCATATCATTGGATGGAAGCATTGCTTTAGATACATTAAAAAGACTCATCCAGACAAAATGCCTCATACAGAGGAGGCTGCGACTAAAGACCCTGCCATCAGAAAGTCTGTCAAAACAACTGCTGCTGAGGTGGAGAAAGAAAGTGGCAGAGGCCAACTCAGGGTAGTTATTAAGGAACCTGCTGATGTACCAGCGTTTCAGAACATGAAGAGTGCACATCCAAATATCGGGGGACCAGGTGTTGCAGGTCTCCTTGGCCCTCCTCCTAGAGGTCTTCATTCAGGTGGCCCATTTGATGGTGGTTTTCCAGATCCCACATTCCCGGGGGAGTATCCTCCTCGGGGTGGAATGATGTCAGATTTCTCCCCGGGCATGCACGGAGGTCTGGGTGATAGTCCCATGAATAGGGGACTGTCAGGCTCTGGTCGGTATGATTCAGGGCCGGGACCTGACAGGTTTATGGGCAGCCCAGACAACATGCAGCGTTTCCCCAACAGTGGACCCATGCGTATGGGATCAGATGACTTTGGAGGGGGCCCACGCAATGAGGGCATGGGCAGGCCTTACCCTGGTGACATCTCCCTGGACAGAGAAAGAATGATGGGAGGTGGACCTAAAGGCCCAGAGTCTAGCAGCACCCTTGCAGCACTTCTCAGATGCCTGgACACCTTTCGTATTGAGAATGAAGATGATGCTCAGATTGTGCTGAAGGTCACACAGAAGCTTACAGATGTCTTGATGGAATACCGCCTTCGAAGCATCTCCTCGGGTCCCAGTTCTGGCTTATCAAGCTCCCTTGGCAGCATGAACTACTCTTCACGTATGCCTCTCAGTTCAAATGACCGATACTCTGGAGGCATGTCAGGCTCTTCAAGATACTACAACTAAGCAGCTTCAGTGACATCCCACCTTTTGTCAATTCCTGCATGTACCCCCCTCCTCACCCCTACAGCTGATCTTCCCCTTTCTACTTTTTAgtacaaatgttttaatttgttttataatttttaggACCAAATTTACTGCTACCCCTTTCTGAATTAAGCTTTTCTGGTTACTTTTCTGGACAAAATACCATTCAATCAGGGTGTTGTTGCAAGACAGAGTTTAATTAATCCTTAGAGGTTACAGTGTATTTGTTTGGTGTTCAATAAATTTTCTACAGCAATCCcaataaactctttaaactgTAA
>XM_022679526.1
GGTCGTCTGGTTTTATATTAGCGGAGCTGAGGTTAGTGAAAGCGGTGAAGCTGTTTTTATCCATCTGGAAAATTAGCTCGCTTTGTTGTTCAGCTCAGATAAAAACAGGATCTCTGAAAGAATGGAAGGTCAACCGAATCctcagaagaaaaagaacttcGGGATGAAGAAAAAGCAGCAATTCCACAGTGGTGATATAGTGTTCACCAGAAATGGAGCAATTCAGACTCTTCCCGCCATGACCAAACGTCTGAAAACGATCACTGAGCCGGTTATTGGCTTGCAGTACGTATGGGAGTTTCGCAGCCCCACCAAGTCAGTTCCTCCTCATTACCAGTGCAAACTGTGCAAGGTCCAGCGTCTGCAGAATGAAATGGCTGCTCATATCATTGGATGGAAGCATTGCTTTAGATACATTAAAAAGACTCATCCAGACAAAATGCCTCATACAGAGGAGGCTGCGACTAAAGACCCTGCCATCAGAAAGTCTGTCAAAACAACTGCTGCTGAGGTGGAGAAAGAAAGTGGCAGAGGCCAACTCAGGGTAGTTATTAAGGAACCTGCTGATGTACCAGCGTTTCAGAACATGAAGAGTGCACATCCAAATATCGGGGGACCAGGTGTTGCAGGTCTCCTTGGCCCTCCTCCTAGAGGTCTTCATTCAGGTGGCCCATTTGATGGTGGTTTTCCAGATCCCACATTCCCGGGGGAGTATCCTCCTCGGGGTGGAATGATGTCAGATTTCTCCCCGGGCATGCACGGAGGTCTGGGTGATAGTCCCATGAATAGGGGACTGTCAGGCTCTGGTCGGTATGATTCAGGGCCGGGACCTGACAGGTTTATGGGCAGCCCAGACAACATGCAGCGTTTCCCCAACAGTGGACCCATGCGTATGGGATCAGATGACTTTGGAGGGGGCCCACGCAATGAGGGCATGGGCAGGCCTTACCCTGGTGACATCTCCCTGGACAGAGAAAGAATGATGGGAGGTGGACCTAAAGGCCCAGAGTCTAGCAGCACCCTTGCAGCACTTCTCAGATGCCTGgACACCTTTCGTATTGAGAATGAAGATGATGCTCAGATTGTGCTGAAGGTCACACAGAAGCTTACAGATGTCTTGATGGAATACCGCCTTCGAAGCATCTCCTCGGGTCCCAGTTCTGGCTTATCAAGCTCCCTTGGCAGCATGAACTACTCTTCACGTATGCCTCTCAGTTCAAATGACCGATACTCTGGAGGCTCTTCAAGATACTACAACTAAGCAGCTTCAGTGACATCCCACCTTTTGTCAATTCCTGCATGTACCCCCCTCCTCACCCCTACAGCTGATCTTCCCCTTTCTACTTTTTAgtacaaatgttttaatttgttttataatttttaggACCAAATTTACTGCTACCCCTTTCTGAATTAAGCTTTTCTGGTTACTTTTCTGGACAAAATACCATTCAATCAGGGTGTTGTTGCAAGACAGAGTTTAATTAATCCTTAGAGGTTACAGTGTATTTGTTTGGTGTTCAATAAATTTTCTACAGCAATCCcaataaactctttaaactgTAA
>XM_022679531.1
GTCGTCTGGTTTTATATTAGCGGAGCTGAGGTTAGTGAAAGCGGTGAAGCTGTTTTTATCCATCTGGAAAATTAGCTCGCTTTGTTGTTCAGCTCAGATAAAAACAGGATCTCTGAAAGAATGGAAGGTCAACCGAATCctcagaagaaaaagaacttcGGGATGAAGTGTTCACCAGAAATGGAGCAATTCAGACTCTTCCCGCCATGACCAAACGTCTGAAAACGATCACTGAGCCGGTTATTGGCTTGCAGTACGTATGGGAGTTTCGCAGCCCCACCAAGTCAGTTCCTCCTCATTACCAGTGCAAACTGTGCAAGGTCCAGCGTCTGCAGAATGAAATGGCTGCTCATATCATTGGATGGAAGCATTGCTTTAGATACATTAAAAAGACTCATCCAGACAAAATGCCTCATACAGAGGAGGCTGCGACTAAAGACCCTGCCATCAGAAAGTCTGTCAAAACAACTGCTGCTGAGGTGGAGAAAGAAAGTGGCAGAGGCCAACTCAGGGTAGTTATTAAGGAACCTGCTGATGTACCAGCGTTTCAGAACATGAAGAGTGCACATCCAAATATCGGGGGACCAGGTGTTGCAGGTCTCCTTGGCCCTCCTCCTAGAGGTCTTCATTCAGGTGGCCCATTTGATGGTGGTTTTCCAGATCCCACATTCCCGGGGGAGTATCCTCCTCGGGGTGGAATGATGTCAGATTTCTCCCCGGGCATGCACGGAGGTCTGGGTGATAGTCCCATGAATAGGGGACTGTCAGGCTCTGGTCGGTATGATTCAGGGCCGGGACCTGACAGGTTTATGGGCAGCCCAGACAACATGCAGCGTTTCCCCAACAGTGGACCCATGCGTATGGGATCAGATGACTTTGGAGGGGGCCCACGCAATGAGGGCATGGGCAGGCCTTACCCTGGTGACATCTCCCTGGACAGAGAAAGAATGATGGGAGGTGGACCTAAAGGCCCAGAGTCTAGCAGCACCCTTGCAGCACTTCTCAGATGCCTGgACACCTTTCGTATTGAGAATGAAGATGATGCTCAGATTGTGCTGAAGGTCACACAGAAGCTTACAGATGTCTTGATGGAATACCGCCTTCGAAGCATCTCCTCGGGTCCCAGTTCTGGCTTATCAAGCTCCCTTGGCAGCATGAACTACTCTTCACGTATGCCTCTCAGTTCAAATGACCGATACTCTGGAGGCATGTCAGGCTCTTCAAGATACTACAACTAAGCAGCTTCAGTGACATCCCACCTTTTGTCAATTCCTGCATGTACCCCCCTCCTCACCCCTACAGCTGATCTTCCCCTTTCTACTTTTTAgtacaaatgttttaatttgttttataatttttaggACCAAATTTACTGCTACCCCTTTCTGAATTAAGCTTTTCTGGTTACTTTTCTGGACAAAATACCATTCAATCAGGGTGTTGTTGCAAGACAGAGTTTAATTAATCCTTAGAGGTTACAGTGTATTTGTTTGGTGTTCAATAAATTTTCTACAGCAATCCcaataaactctttaaactgTAA

Function

GO:

id name namespace
GO:1990234 transferase complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679523.1 True 1575 mRNA 0.47 12 6172797 6184314
XM_022679526.1 False 1566 mRNA 0.47 12 6172797 6184314
XM_022679531.1 False 1543 mRNA 0.47 11 6172797 6184313

Neighbor

gene id symbol gene type direction distance location
tmem67 tmem67 coding downstream 6988 6138052 ~ 6165809 (-)
LOC103024966 NA coding downstream 39243 6126286 ~ 6133554 (-)
LOC103025292 NA coding downstream 56245 6110935 ~ 6116552 (-)
LOC103030569 LOC108426361 coding downstream 164740 5797443 ~ 6008057 (-)
LOC103044191 NA coding downstream 389798 5771220 ~ 5782999 (-)
invs invs coding upstream 51495 6235809 ~ 6291528 (-)
stx17 stx17 coding upstream 148997 6333311 ~ 6352097 (-)
nr4a3 nr4a3,LOC107596005,LOC107657725,LOC107687818,LOC107593690 coding upstream 183804 6368118 ~ 6411421 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 490762 6675076 ~ 6896820 (-)
trnat-ugu_7 NA coding upstream 738753 6923067 ~ 6923139 (-)
G16865 NA non-coding downstream 137894 6033217 ~ 6034903 (-)
G16851 NA non-coding downstream 320063 5852194 ~ 5852734 (-)
G16720 NA non-coding downstream 376540 5795668 ~ 5796257 (-)
G16716 NA non-coding downstream 380686 5791486 ~ 5792111 (-)
G16667 NA non-coding downstream 739296 5433289 ~ 5433501 (-)
G16886 tex10 non-coding upstream 6798 6191112 ~ 6191699 (-)
G16855 NA non-coding upstream 139166 6323480 ~ 6324346 (-)
G16914 NA non-coding upstream 267110 6451424 ~ 6452260 (-)
G16919 alg2,LOC107706186,LOC107595974,LOC107593685,LOC107723517,LOC107657723 non-coding upstream 361029 6545343 ~ 6548426 (-)
G16925 NA non-coding upstream 390530 6574844 ~ 6575316 (-)
LOC103024654 NA other downstream 62514 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 72453 6083120 ~ 6100344 (-)
G16709 NA other downstream 472310 5697045 ~ 5700487 (-)
G16568 NA other downstream 1353326 4814714 ~ 4819471 (-)
rad51d rad51d other downstream 2197620 3968924 ~ 3975177 (-)
LOC111191940 NA other upstream 170631 6354945 ~ 6363005 (-)
sec61b sec61b,LOC102796100 other upstream 350545 6534859 ~ 6544275 (-)
LOC103026934 ahrr,LOC108431062 other upstream 1740615 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 2676820 8861134 ~ 8886317 (-)
G17638 NA other upstream 3378113 9562427 ~ 9562725 (-)

Expression


Co-expression Network