G17237


Basic Information

Item Value
gene id G17237
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7607954 ~ 7691689 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23258
aaaaaagtacctCAATTCCATTAAAGTATCTtacataataaaatgaaaagccCAAATACACAGAATAGTTCTTGCATAATCATTTCTAAAGATTGACAGCAGAGGGATGAGTGACAATTTTACATAATTGTCACAAAGAAAATGTACACAGCATTTATGTGAAAGAAAATGTGGCTAAAACCAATGTGACTCTAAAACtgcattatataaaatgttacaaCAAATGCTTTGCTAATTTGTGAAGCTTGTGAGGGCTTAAATTTGGGTGGGGGTGGATACATGGCAGGCAAAACACCCTGCAGATGTGGAACTGAAACATCTGCTGATgatgaaaaagaggaagagcaCCACTAGGTTCACTAGTCAGCCCTTGagacagaataaagaaaaaaaaaaTGTAAAAAAT
>TU23259
aaaaaagtacctCAATTCCATTAAAGTATCTtacataataaaatgaaaagccCAAATACACAGAATAGTTCTTGCATAATCATTTCTAAAGATTGACAGCAGAGGGATGAGTGACAATTTTACATAATTGTCACAAAGAAAATGTACACAGCATTTATGTGAAAGAAAATGTGGCTAAAACCAATGTGACTCTAAAACtgcattatataaaatgttacaaCAAATGCTTTGCTAATTTGTGAAGCTTGTGAGGGCTTAAATTTGGGTGGGGGTGGATACATGGCAGGCAAAACACCCTGCAGATGTGGAACTGAAACATCTGCTGATgatgaaaaagaggaagagcaCCACTAGGTTCACTAGTCAGCCCTTGagacagaataaagaaaaaaaaaaagaaaaaaat
>TU23260
aaaaaagtacctCAATTCCATTAAAGTATCTtacataataaaatgaaaagccCAAATACACAGAATAGTTCTTGCATAATCATTTCTAAAGATTGACAGCAGAGGGATGAGTGACAATTTTACATAATTGTCACAAAGAAAATGTACACAGCATTTATGTGAAAGAAAATGTGGCTAAAACCAATGTGACTCTAAAACtgcattatataaaatgttacaaCAAATGCTTTGCTAATTTGTGAAGCTTGTGAGGGCTTAAATTTGGGTGGGGGTGGATACATGGCAGGCAAAACACCCTGCAGATGTGGAACTGAAACATCTGCTGATgatgaaaaagaggaagagcaCCACTAGGTTCACTAGTCAGCCCTTGagacagaataaagaaaaaaaaaaaagtaaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23258 False 406 lncRNA 0.32 2 7607954 7691689
TU23259 False 406 lncRNA 0.34 2 7658352 7691689
TU23260 True 407 lncRNA 0.53 2 7643391 7691689

Neighbor

gene id symbol gene type direction distance location
LOC103024588 LOC103024588,LOC108431074 coding downstream 228740 7373857 ~ 7379214 (-)
LOC103024076 NA coding downstream 239392 7338760 ~ 7368562 (-)
ptpn3 ptpn3,LOC108256378,LOC107687805,LOC107706310,LOC107595851,LOC107723490,LOC107657714,LOC107593679 coding downstream 322224 7239009 ~ 7285730 (-)
LOC103025538 epb41l4b,LOC108443285,LOC108256379,LOC107706320 coding downstream 371552 7179416 ~ 7236402 (-)
virma kiaa1429,LOC107706278,LOC107723452,LOC107595823,LOC107593674 coding downstream 468828 7112050 ~ 7139126 (-)
mrpl17 mrpl17,LOC107657704 coding upstream 142556 7834245 ~ 7839474 (-)
LOC103033961 LOC108431065 coding upstream 168335 7860024 ~ 7872013 (-)
LOC103029950 NA coding upstream 185345 7877034 ~ 7882211 (-)
LOC103027725 NA coding upstream 196298 7887987 ~ 7909267 (-)
anks6 anks6,LOC103376383 coding upstream 326459 8018148 ~ 8036248 (-)
G17187 NA non-coding downstream 96868 7510637 ~ 7511086 (-)
G17181 NA non-coding downstream 171334 7436376 ~ 7436620 (-)
G17134 NA non-coding downstream 235466 7370368 ~ 7372488 (-)
G17144 LOC108431076,LOC108256683 non-coding downstream 285646 7321499 ~ 7322308 (-)
G17123 NA non-coding downstream 397210 7206012 ~ 7210744 (-)
G17305 NA non-coding upstream 300078 7991767 ~ 7992427 (-)
G17313 NA non-coding upstream 364344 8056033 ~ 8056289 (-)
G17326 hus1 non-coding upstream 457278 8148967 ~ 8159385 (-)
G17514 NA non-coding upstream 977301 8668990 ~ 8673177 (-)
G17532 NA non-coding upstream 1054691 8746380 ~ 8788287 (-)
sec61b sec61b,LOC102796100 other downstream 1063679 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 1244949 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 1497671 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 1507610 6083120 ~ 6100344 (-)
G16709 NA other downstream 1907467 5697045 ~ 5700487 (-)
LOC103026934 ahrr,LOC108431062 other upstream 233240 7924929 ~ 8007620 (-)
LOC111188216 NA other upstream 1169445 8861134 ~ 8886317 (-)
G17638 NA other upstream 1870738 9562427 ~ 9562725 (-)
mak mak other upstream 2303456 9995145 ~ 10009151 (-)
G17792 NA other upstream 2554986 10246675 ~ 10247318 (-)

Expression


Co-expression Network