kcns2 (kcns2,LOC102789903)


Basic Information

Item Value
gene id kcns2
gene name kcns2,LOC102789903
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8569446 ~ 8573152 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243417.3
GAAGATCGTGCGCTACAGCCTACGTGTTGCTGCGCAGCAACACAGCTCAGCCAGGCGAGGATCTGCGGGGATTTCCATCGACTGAGACAAAGAGCACGAAGATGGAAGATCGTTCAAGACTGTGCTTTACTCCTGCACGCCTGAGATCCTTTGTAGGAGCTGTTATTATCTCGTGAAGGGGGGATAAGGAGACCCCCAGTCTTTAAGAATGCCTGAGAGGCAGAGGAGCGTCTGGAGGGTATAGTGAGCATAGTGAAGATTGTGTGAGACGCTGGCTGGATCCACCCCCAGTCCTCTTAGTATTAAACTCAGACTCATTTCAGAGTCAGTTTAATGGAATCACCCGGCTAATTCCTACCATCAGAGCCAAGGACTTTCAGTAGTAGAATCCACCCAACAAGAACCTCAAGACATGACCGGACAGAGTCTCAAGGGTTTAAATGGAGCCAGTGCAGAAAACAGCGCCATACGCATCAACGTAGGAGGTTTCAAGAGGCGACTTCTATCAAACATCCTCTGCCGTTTCCCAGAGACAAGACTAGCTCGTTTGCTTCAATGCCAGTCAAAGGAATCGATCCTTGAACTGTGCGATGACTACGACGATGCAGAAAAGGAGTTCTATTTTGACAGGAACCCTGCACTTTTCCCCTACGTCCTGAACTTCTACAATACAGGTCGCTTGCATGTTATGGGTGAGCTCTGCATTTTCTCCTTCAGCCAGGAAATTGAATACTGGGGCATCAATGAGTTCTTCATCGACTCCTGTTGCAGCAGCACCTACCACTGCAGGATAATGGAGCCGGATCGAGAGGAGTGGGAGGacaagagtgatgaggggagtaCTACTTCTTCTTTCGATGAGATCTTGGAATTCTACAGTGATGCTGCCAAGTTTGACAAACAGCCACTGGGCAGCATTAGAAGAAAGATCTGGCTGATGCTGGACAATCCTGGCTACTCCATACCCAGTCGTGTCATCAGTGTCTTTTCCATTCTGGTGGTTCTGGGGTCCATAGCTACCATGTGCATGAACAGCATGAGTGAGTTTGCTCTGCAGGACAGTGAAGGCCTTCCTCAGGAAGATCCTCGCTTTGAGACTGTTGAGCATTTTGGAATAGGTTGGTTCACCTTCGAGCTCATAGCGAGGTTCATGGTGGCGCCAGACCTCCTCCACTTCTTCGAGCACCCTCTGAACCTGATCGACCTGGTGTCCATTCTGCCTTTCTACCTCACGCTTCTGATTAACCTGGTGGTTGAAAGCAGTCCTGCACTGGCCAACCTGGGCCGTGTCGCTCAGGTGCTCCGGCTGATGCGTGTCTTCCGAATCCTCAAACTGGCACGGCACTCAACAGGTCTGCGATCTCTTGGAGCTACTCTGAAAAACAGCTACAAGGAAGTAGGGCTGCTGCTATTATACCTGGCGGTGGGGGTGTCCTTCTTCTCTGTGATGGCCTACACCATTGAAAAGGAGGACAATGATGGACTGACCACCATCCCAGCCTGCTGGTGGTGGGCCACAGTTAGCATGACGACAGTGGGCTATGGAGATGTCGTGCCAGGGTCTATCGCAGGGAAGCTCACTGCCTCTGCTTGCATTCTGGCAGGCATCTTGGTGGTAGTGCTGCCCATCACGCTCATCTTCAACAAGTTCTCCTTGTTCTACAAGAGACAGAAGCAGCTGGAGATTGCTATGAGGAGTTGTGATTTTGATGAGGAAATTAAGGAGGTGCCCTCGATGAATCTGAGGAACTATTACGCCCATAAAGTGAAGTCACTCATGGCGAGTCTGTCAAATATGAGTCGCAGTTCTCTCAGTGAGCAAAGCCTGAATGATTCTCTGCAGTAGCCCAAAGCCTTGACTGCAAACTCCCTTGAATGGCTTTAGAGAATGGAAATATTCGATTTGTGTCCAGAGCACTCTGCTGTATGAAATAGTTCTGTCACACTGTCTGATGTTGGCTGGGTTTTCAATTTTCCTGCACTGCCATTCTAAAACGATGACTGATTTGTGTGTTTGCTGTCAGTGTTCTTGAAAACAGTCTGTTTTTCACTATGAGTGAATGCGTTTACATGCACATCATGATCTGATTATAAACTGATTTCCGCagcaaaaatgctttttttgccTAGGTTTGACTTCCTATTATTCCAAATTGCTATAGTAATATTACTTGAAACATATATCTCAAATGCATAAGTATGATATATTTATGAATACAGTGGTGTGATATGGCAgccttttgatttttttttttattagactcCAAATCTggtctatatatattttctttaaattctgtttattgagctgtaaactcttttctttttcattttaagtCTCTGCACGACAAGTGCAATCATCTTCTCCCCAAGCTCAGCTGTGCACACGGCTACCGTAAAAAACATGGTTTAGATGTGCACTCCAACCTTAAATCGCATCTGGTTCTGTGTGATTATTGGCTGGCTTTAAAGCAAAAATTGCATTATTGACCTACTCAAATCTCCCATTCGTTTTCCCATTATAAGATTAAACACACTTATCAGATTACTAGCAAAATCCAATGATCTTTAGTAGTAATTGGATAACtatgtgcatgtaaacacactcaggGTTTGGATGCAGGTTTAGAATTTCTCTGTTTTTACACCAGTGATATTCACTGATCCCCAACACACCACTCTAGCATTTACTCActgaaaaatgaacataaccCTATTTTACCAGCCATACAGTGATTTAACCAATGCTGTTCCAGTGAAATTCAATCTGTGGCAATGTAACAATGTTTTCTCAATGTTGGAGTTCTGTACTTGAATCCTGGTAGGGCACATGTATTCAGTGTTGTATAATTAACAGTCTGAATATGTTGTCTCGATATGTGCAGGAATATACCCCTCCTGCCAGTGGTGTCTCTTATGAGAGTTtcagtgtttaaatgttaaGTGGGAACACCGTATCTGAATCACATGTAACAACTGTTAAATTGCACAAGTAAAGAAACACAAGcttttataaatattgtaatgtgtctttaatgttttattttctttaat

Function

symbol description
kcns2 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of delayed rectifier potassium channel activity. Predicted to be located in perinuclear region of cytoplasm and plasma membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane.

NR:

description
potassium voltage-gated channel subfamily S member 2

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04932 KCNS2, KV9.2; potassium voltage-gated channel delayed-rectifier subfamily S member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243417.3 True 3054 mRNA 0.44 2 8569446 8573152

Neighbor

gene id symbol gene type direction distance location
osr2 osr2,LOC106591507 coding downstream 64969 8500453 ~ 8504477 (-)
vps13b vps13b coding downstream 73695 8186028 ~ 8495751 (-)
LOC103026338 LOC103026338,LOC108414855 coding downstream 427420 8080725 ~ 8142026 (-)
anks6 anks6,LOC103376383 coding downstream 533198 8018148 ~ 8036248 (-)
LOC103027725 NA coding downstream 660179 7887987 ~ 7909267 (-)
pop1 NA coding upstream 16040 8589192 ~ 8603952 (-)
LOC103038077 NA coding upstream 36990 8610142 ~ 8624143 (-)
matn2 NA coding upstream 57071 8630223 ~ 8644432 (-)
LOC103037764 laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533 coding upstream 72124 8645276 ~ 8656874 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding upstream 173733 8746885 ~ 8776247 (-)
G17326 hus1 non-coding downstream 410061 8148967 ~ 8159385 (-)
G17313 NA non-coding downstream 513157 8056033 ~ 8056289 (-)
G17305 NA non-coding downstream 577019 7991767 ~ 7992427 (-)
G17236 NA non-coding downstream 821496 7686941 ~ 7747950 (-)
G17240 NA non-coding downstream 900331 7656754 ~ 7669115 (-)
G17514 NA non-coding upstream 95838 8668990 ~ 8673177 (-)
G17532 NA non-coding upstream 173228 8746380 ~ 8788287 (-)
G17536 NA non-coding upstream 220713 8793865 ~ 8811479 (-)
G17558 NA non-coding upstream 338818 8911970 ~ 8960840 (-)
G17585 NA non-coding upstream 411209 8984361 ~ 8985654 (-)
LOC103026934 ahrr,LOC108431062 other downstream 561826 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2025171 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2206441 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2459163 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 2469102 6083120 ~ 6100344 (-)
LOC111188216 NA other upstream 287982 8861134 ~ 8886317 (-)
G17638 NA other upstream 989275 9562427 ~ 9562725 (-)
mak mak other upstream 1421993 9995145 ~ 10009151 (-)
G17792 NA other upstream 1673523 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 2442877 11016029 ~ 11080184 (-)

Expression


Co-expression Network