LOC103038077


Basic Information

Item Value
gene id LOC103038077
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8610142 ~ 8624143 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234720.3
ACCTCCCATTCCAACTAAACCCCCTGAGAGAGAGATCAGCCGCTCTGCTGTTCACTGTGAGCTGAACCCCAGACCCTGCTGACccagagtaagagaaagagaggagggcTGGTCATGACCAGGCAGACTGGAGAGGGAAGATAATGAGTCTCTGCtaaacaccagaaaaaaacaataagtttCCAAACTCTAAACAAGTTGTAAACCCAGAGTTCTGAGCTGTGAGAGTAGATCTGACTTCAGGGAGAAGATGGGCTGTTCATCCTCCAGCTCTCAGACTGTGGATCAGGAAAACAGACCAGGCTCTAAACCTGAGGAGGCTGGTGAAGACACGGACTTTGTCTCCAGTAATGGAATACTAGCAGATGATGCAGAAACTATAGCAGACCAGATGCAGCTGCCAGTGCAGAGTGCCCTGTCGGAAGAACTAGGCCCTGCAGCAGAAGACAGCGAGTTTTCTGCTGCCATTGAGGCTCTGGAGACAGTGGAAGTGGTGGCAGAGCAGGCTGATCTGATTGAGAGTCTAGAGACTACAGCACCTGAACAGCCAGCAGCTTCCACTGAAACGCCACAGGAAGATACTGTGGTCATTGCTGCTTTGGAGGAGCTGAGTCTTGCAGAACCAGCTGAAGCTCCTGCACCTGTTGAGGGTGTTGAAGCAGAATCTGTACAGCCAGTTGAGGCCACGCCTGCTGAGGAACCAGCGGAAGTGGCTGCTTTAGTAGAAGCAGTTCCGGCACAAGAGCCTGAAGTTATACCAGCTGCAGAAGAAACCACTGTAGAATTAGCTACTGTTGCTCCAGAACCTGCACCTGCACCAGAGCCCACTATTGATGTAGAACCtgttttagctgctgaacctgTGCCAGTTCCAGAGGTCAGCCCAGTGGCAGAACCAACAGCAGCTGCAGAACTTGCCCCAGCTGCAGAACCTGCCCCAGTTGAAGAACCTGTCCCGGCTCCAGATCCCATTGTGGCTGTAGAATCCACACCAGCCCCTGAAGAAACCTGTGTAGCACCAGTAGCAGATTCCAGTGCAGTGACAGagcctgcagcagcagcaccagcaccagcggAACCACCACAACCAGAACCTATTGCCCCAGCTGCTTCTGATCCAGAGCCAGTTCATGTGGAGGTAGCAGTGGCTGCAGTAGCAGCAGAAGTAGTTCTACAGGCTGCACAAGAATGTGCAGTCCTCACACCAACAAGTGCAGATACAAATACCCCTCAGCAACCTGCTGCGGAGGCCCCAGCGGCCCCTCAAGgAGGTGTGGGGGAGGGTCCAGCCTCTCAGGCTGAGGCTGAAGCAGACATTGCTgTTGCTGCTGAAGAATGATGGAGCACTTCAGACACTGCTGAGAGACCAGCAAAATGGGGGATAAAACGAGGATGAGAACAGAGGTCAACATGTGTCCCTCTTTCATACACAGACAGTAGTGGGAAATGGTTAGCCCTGATACAATGGTGCCTTTATTCCTGTGAGTCTGTGACTGTTTCTACTGAGCATAGTGTGAGCAAGTGTGACGCAAAGAAATAAAACTCTTCATAACTCGCTTTCTCTGAggaaaaacataccaaaaaatgaataactgtgaactgtgtgtgctgtaacagacaaaaaaatctttgtatGGGATAGTATGGTGTAAATGTGATTACTGAGCTGTTAGTTCTCACCTGTCTGGTTTTTCCTCTACTCTTGTGTCTGCATTGTCTGTGAGGCTGAACAAACAGGTTTCTTCTTCGTTCTCTAAGGGCATCAGTGCATTGGTATAAATAGAAGACCAAAAATACATATCAGGATATTATGTGTACCTTATTGTTTCTACTCTCATATCCATTAATTCAGCTCCACTGGTCGTATACAGTACACAGGTGCACGTTGTAATATAATTACAGGCAATAGTCCTTtagtttctctgcatactttattatcatcattTCACCCTATTCTTCAGTCATCAAGACCCcacagtgtgtgttatagtatGTAGTGGATCAGATAGAGCAGTGcttctggagtttttaaacatctcagtggctacgttcacattaccaggctgaagtaactcaaatctgattttttttttactcaatgtggctcagatctgattttttcatggctgagTCACCTTCATATGTGATCctaatcggatacgtatccgatcaGTGGACATGCGGCatgaatgtgaactgtcaaaTCGGAATTGATGCGTCTTTTTGCGTTTTAGGCacgcgctacgtgcttctctctcgtacccacacatctcttggtgcagctgcaaaacagcaaaagcaaaccgcctgcccttttttctcctcctcgatctgagcatgtacttcagaccagctgtttactcttcactccagcaaaagatgctccacatatgagctgctaacgcatccatttcccctttataaagctaaagTCGTCTctgaaatatgatttttttttgttgttgttggtaaAGTAGGTGACGTTTATACAGATATTAATGTGCACATGTGAGaggtttcagggacagattcgttcactttacgcacagatacagctcacttacatttgtgaatgtgaaccgtcaagatctgagcaaaaaaacgAATTTGAGCAACGTAACCAGTGTCACTGCTGAACTGAGAATAGATCCCCAACCATACATATCCAGCCAGCATTGCCTGTGGAGCGTCTTGTGAGCAGCCTCCTGTGGGTAATGTCCTGTGACCACTGATAAAGAACTAGAGgttgaccaacacaaactgcaacaacagatgagcttctgtctctgactttacaccTACAAAGTAGACGCTATGTAGGAATCTCTAATATAGTGGAGGACAGTgggtggacacagtgtttaaaaactcagcagcactgctgtctctgATCCACACACCAACCACCACGTCAGTGTCAATGCAGGATGGATAATTATCCACTTCCCAAATAATACCTTATCTGTGGTGGTCTTTTAGGGTTCTGTAGATTGGGTTGTAATTCTAGaaatacaaagtgctcctatatgatcagtgcaGCTGAAAAAAATGACAGAGTGGAAAAAACAAGGATGTAGCCATAAAACTAtgattataatgtataatatgtacatgtaaacattttaaaatagattgAGCTGTTTGAAACAGTGTTGTATTGAATCTAACAGTCATTATAGCTGAATTTTTAAAGGCAAATGCATAGAACAAGGAGTAGTGAATGAATTAAACAGACGGACATATGTAATAATTTTTATTGGTAGGGTATAGTGTGTGCTACCCTTATTTGTGTGTTCACTAGCTTACTGAAGCTAGTACTGAAAAACTGCATCCTCTAACTCACACCAGTCAAACCTCTCCTGTAAAAATGTGAATTGTGTTACTGGTCCTTTCCTTCATTCTGTGCTCAGAGTTCACTCTTATTGGGTTTTTCCTGGATTCTTAACCGTTTACTCTGTGAGAATTACATTAACGGTTTTATTGGGAAAATGTATCTAATGAATTCATAATCTGTAGCAGGACCCATGTTGCAAACTTGTATTGTAGTTGCATGGGATTcttcttttttcacattttttagtGTACAGAACcaataaagttacttttactAATGAagaaa
>XM_022679904.1
CACCTCCCATTCCAACTAAACCCCCTGAGAGAGAGATCAGCCGCTCTGCTGTTCACTGTGAGCTGAACCCCAGACCCTGCTGACccagagtaagagaaagagaggagggcTGGTCATGACCAGGCAGACTGGAGAGGGAAGATAATGAGTCTCTGCtaaacaccagaaaaaaacaataagtttCCAAACTCTAAACAAGTTGTAAACCCAGAGTTCTGAGCTGTGAGAGTAGATCTGACTTCAGGGAGAAGATGGGCTGTTCATCCTCCAGCTCTCAGACTGTGGATCAGGAAAACAGACCAGGCTCTAAACCTGAGGAGGCTGGTGAAGACACGGACTTTGTCTCCAGTAATGGAATACTAGCAGATGATGCAGAAACTATAGCAGACCAGATGCAGCTGCCAGTGCAGAGTGCCCTGTCGGAAGAACTAGGCCCTGCAGCAGAAGACAGCGAGTTTTCTGCTGCCATTGAGGCTCTGGAGACAGTGGAAGTGGTGGCAGAGCAGGCTGATCTGATTGAGAGTCTAGAGACTACAGCACCTGAACAGCCAGCAGCTTCCACTGAAACGCCACAGGAAGATACTGTGGTCATTGCTGCTTTGGAGGAGCTGAGTCTTGCAGAACCAGCTGAAGCTCCTGCACCTGTTGAGGGTGTTGAAGCAGAATCTGTACAGCCAGTTGAGGCCACGCCTGCTGAGGAACCAGCGGAAGTGGCTGCTTTAGTAGAAGCAGTTCCGGCACAAGAGCCTGAAGTTATACCAGCTGCAGAAGAAACCACTGTAGAATTAGCTACTGTTGCTCCAGAACCTGCACCTGCACCAGAGCCCACTATTGATGTAGAACCtgttttagctgctgaacctgTGCCAGTTCCAGAGGTCAGCCCAGTGGCAGAACCAACAGCAGCTGCAGAACTTGCCCCAGCTGCAGAACCTGCCCCAGTTGAAGAACCTGTCCCGGCTCCAGATCCCATTGTGGCTGTAGAATCCACACCAGCCCCTGAAGAAACCTGTGTAGCACCAGTAGCAGATTCCAGTGCAGTGACAGagcctgcagcagcagcaccagcaccagcggAACCACCACAACCAGAACCTATTGCCCCAGCTGCTTCTGATCCAGAGCCAGTTCATGTGGAGGTAGCAGTGGCTGCAGTAGCAGCAGAAGTAGTTCTACAGGCTGCACAAGAATGTGCAGTCCTCACACCAACAAGTGCAGATACAAATACCCCTCAGCAACCTGCTGCGGAGGCCCCAGCGGCCCCTCAAGTTGCTGCTGAAGAATGATGGAGCACTTCAGACACTGCTGAGAGACCAGCAAAATGGGGGATAAAACGAGGATGAGAACAGAGGTCAACATGTGTCCCTCTTTCATACACAGACAGTAGTGGGAAATGGTTAGCCCTGATACAATGGTGCCTTTATTCCTGTGAGTCTGTGACTGTTTCTACTGAGCATAGTGTGAGCAAGTGTGACGCAAAGAAATAAAACTCTTCATAACTCGCTTTCTCTGAggaaaaacataccaaaaaatgaataactgtgaactgtgtgtgctgtaacagacaaaaaaatctttgtatGGGATAGTATGGTGTAAATGTGATTACTGAGCTGTTAGTTCTCACCTGTCTGGTTTTTCCTCTACTCTTGTGTCTGCATTGTCTGTGAGGCTGAACAAACAGGTTTCTTCTTCGTTCTCTAAGGGCATCAGTGCATTGGTATAAATAGAAGACCAAAAATACATATCAGGATATTATGTGTACCTTATTGTTTCTACTCTCATATCCATTAATTCAGCTCCACTGGTCGTATACAGTACACAGGTGCACGTTGTAATATAATTACAGGCAATAGTCCTTtagtttctctgcatactttattatcatcattTCACCCTATTCTTCAGTCATCAAGACCCcacagtgtgtgttatagtatGTAGTGGATCAGATAGAGCAGTGcttctggagtttttaaacatctcagtggctacgttcacattaccaggctgaagtaactcaaatctgattttttttttactcaatgtggctcagatctgattttttcatggctgagTCACCTTCATATGTGATCctaatcggatacgtatccgatcaGTGGACATGCGGCatgaatgtgaactgtcaaaTCGGAATTGATGCGTCTTTTTGCGTTTTAGGCacgcgctacgtgcttctctctcgtacccacacatctcttggtgcagctgcaaaacagcaaaagcaaaccgcctgcccttttttctcctcctcgatctgagcatgtacttcagaccagctgtttactcttcactccagcaaaagatgctccacatatgagctgctaacgcatccatttcccctttataaagctaaagTCGTCTctgaaatatgatttttttttgttgttgttggtaaAGTAGGTGACGTTTATACAGATATTAATGTGCACATGTGAGaggtttcagggacagattcgttcactttacgcacagatacagctcacttacatttgtgaatgtgaaccgtcaagatctgagcaaaaaaacgAATTTGAGCAACGTAACCAGTGTCACTGCTGAACTGAGAATAGATCCCCAACCATACATATCCAGCCAGCATTGCCTGTGGAGCGTCTTGTGAGCAGCCTCCTGTGGGTAATGTCCTGTGACCACTGATAAAGAACTAGAGgttgaccaacacaaactgcaacaacagatgagcttctgtctctgactttacaccTACAAAGTAGACGCTATGTAGGAATCTCTAATATAGTGGAGGACAGTgggtggacacagtgtttaaaaactcagcagcactgctgtctctgATCCACACACCAACCACCACGTCAGTGTCAATGCAGGATGGATAATTATCCACTTCCCAAATAATACCTTATCTGTGGTGGTCTTTTAGGGTTCTGTAGATTGGGTTGTAATTCTAGaaatacaaagtgctcctatatgatcagtgcaGCTGAAAAAAATGACAGAGTGGAAAAAACAAGGATGTAGCCATAAAACTAtgattataatgtataatatgtacatgtaaacattttaaaatagattgAGCTGTTTGAAACAGTGTTGTATTGAATCTAACAGTCATTATAGCTGAATTTTTAAAGGCAAATGCATAGAACAAGGAGTAGTGAATGAATTAAACAGACGGACATATGTAATAATTTTTATTGGTAGGGTATAGTGTGTGCTACCCTTATTTGTGTGTTCACTAGCTTACTGAAGCTAGTACTGAAAAACTGCATCCTCTAACTCACACCAGTCAAACCTCTCCTGTAAAAATGTGAATTGTGTTACTGGTCCTTTCCTTCATTCTGTGCTCAGAGTTCACTCTTATTGGGTTTTTCCTGGATTCTTAACCGTTTACTCTGTGAGAATTACATTAACGGTTTTATTGGGAAAATGTATCTAATGAATTCATAATCTGTAGCAGGACCCATGTTGCAAACTTGTATTGTAGTTGCATGGGATTcttcttttttcacattttttagtGTACAGAACcaataaagttacttttactAATGAagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234720.3 True 3619 mRNA 0.45 4 8610142 8624142
XM_022679904.1 False 3566 mRNA 0.44 3 8610142 8624143

Neighbor

gene id symbol gene type direction distance location
pop1 NA coding downstream 6190 8589192 ~ 8603952 (-)
kcns2 kcns2,LOC102789903 coding downstream 36990 8569446 ~ 8573152 (-)
osr2 osr2,LOC106591507 coding downstream 105665 8500453 ~ 8504477 (-)
vps13b vps13b coding downstream 114391 8186028 ~ 8495751 (-)
LOC103026338 LOC103026338,LOC108414855 coding downstream 468116 8080725 ~ 8142026 (-)
matn2 NA coding upstream 6080 8630223 ~ 8644432 (-)
LOC103037764 laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533 coding upstream 21133 8645276 ~ 8656874 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding upstream 122742 8746885 ~ 8776247 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding upstream 188881 8813024 ~ 8831921 (-)
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding upstream 249739 8873882 ~ 8877125 (-)
G17326 hus1 non-coding downstream 450757 8148967 ~ 8159385 (-)
G17313 NA non-coding downstream 553853 8056033 ~ 8056289 (-)
G17305 NA non-coding downstream 617715 7991767 ~ 7992427 (-)
G17236 NA non-coding downstream 862192 7686941 ~ 7747950 (-)
G17240 NA non-coding downstream 941027 7656754 ~ 7669115 (-)
G17514 NA non-coding upstream 44847 8668990 ~ 8673177 (-)
G17532 NA non-coding upstream 122237 8746380 ~ 8788287 (-)
G17536 NA non-coding upstream 169722 8793865 ~ 8811479 (-)
G17558 NA non-coding upstream 287827 8911970 ~ 8960840 (-)
G17585 NA non-coding upstream 360218 8984361 ~ 8985654 (-)
LOC103026934 ahrr,LOC108431062 other downstream 602522 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2065867 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2247137 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2499859 6105816 ~ 6110283 (-)
glipr2 glipr2,glipr2l,LOC107706057,LOC107689891 other downstream 2509798 6083120 ~ 6100344 (-)
LOC111188216 NA other upstream 236991 8861134 ~ 8886317 (-)
G17638 NA other upstream 938284 9562427 ~ 9562725 (-)
mak mak other upstream 1371002 9995145 ~ 10009151 (-)
G17792 NA other upstream 1622532 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 2391886 11016029 ~ 11080184 (-)

Expression


Co-expression Network