G57704


Basic Information

Item Value
gene id G57704
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12305639 ~ 12372174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65735
TATTTATTTATTTATTAATTATTTTTATTATTATTATTATTATTGTATTATTTATTTATTCCAGTGACATAGTGGAGATGTTCTGGAAAGTGTTAGGGAAGCATTGATATTTTTTTTTTTTTCTTTTCTTATTTGATTTAAAAAAAAAAAAAAATAATAATAATAATTCCTTAAATGTTAAGTTTATTATTATTATTATTATTATTATTATTATATTTTAATAAAAATATTTTTCATTTAATATAATAATTGTAGTTGTTAAAATAATTTTATGAACAAATGAAAAATGTTGTTATTATTAATATTATTTTTATTATTATAGTGGCCATCCATGCTGAGTCCTGAAATTTATTAAATAGATTGCCCTTCAACAAGGTTTATAAAACTTATAATTTACAGAAAACGCTGTAAGGGACATGTAGACTCTTATTCAAAGACTTGACACTCCAACTGTACCAAAGACTGTAGAATAACACAAGACGCGTCACTTGTATTGTTTTGAATGGGAGAAAGTGCAACACGCAATATGGCGGAATAAGTCCCGCCTTCTAAATAATTGGCGATTGGTAAAGTCATTGCGTTACTGCAACAGCCGTTAGAAGCTCCGGTTCCTATAGAAACAGTCAGACGCGCGCCTCCAAAATGAGACACAAGAGACGCGCATATAGGACTGCACATGCACATTAGCTTGATCCAGCCTGAAAAATATAGTTTTTTGTCATGGTTTGAGCATTTAGAAACAAAATTTATGAGACAATTGTTGTCAGATTTCATTGGTGATTTCAAATATGAAATTTAATCGAAAGCTTGGCAAACAGCTTTGGAAAATTTGATGTTTCCCCATTCAAAAAGATAGGAGCTGCACTTGCATGCCTGAGAGGCGTTTCAAAGATGGCCGCCGAGTGAAATGACTTGTCTTAAAGGGACTTTGACTGTACTTGAAAACTTTAGTCATGAAGTCTAGACTCAATTGAACAAAATAATGAAAATTGAATGTTCTTCGACTAGGTTTATTAAACTAACCTGCATTGTATAGAAAACTTTTACCAGAGGGACTTGAACTCCAAATTAAAGATGAGCAAAATATGCAAAATTGTTTGCCCTTCAAGGTTTACAAAACTAACCTGTAATAGAAAACGGTTCACTTCACCTCAAAGACTTGAGACTTGAGAAAATGTCTGCCATATGGTGCCTGTGCATTGCAGGGAATATAATATGTCAGGATAAGTCTTAAAGAGACTTTGAGGCCTGTCTTATAGCGCTGTCTTGGCAGCATGGCTGGATCTCATCGTTTTTGTTTGATTAAAAGCGCACAGGAGTTTGTAGCACACGGTAGGTGCAAGAGCAGGGCTGACAGCTTAACCACTGATTATTCAAGCCTCTTAGGCTAAGCCATGGCACTCCAGTGATGAACGCCTTCTCCACTTCACATTCCCGCTCCCTCGACTTTTTTTTTTTTTGCATTGCTTTCTTACTCCCTCTCTCTCTCTTCCTTTCTCATTGAGCAGTGGGATCAGTAGCAGAGTGATTCATGCAGTGCTGAGGCTTTATTTAGACATAATCCGCTGAGTGTCACTATGGCACGAGGCTTTGGTCAGGTTCTCCTACCATGCTCCTGCCTGCCATCGCACCCAACCCCCAACAATATGGGAGTGTGTCAGCGGGTCACATGGCGTGACGCGAGGAGACACCCAACCATGAATGATGCAGCATTTTCTCAGCGGCCTCGCCCCTCTTATCGGACGGGGAGTGATCGGCAGCGTCGTGAGGAGGAGAGAGAGGATGTCCGCTTCCTTGCAAATGCGTTCTAATAAAATCTAGAGCCTCTGGAGCTTTTAGTAAAAGCTCTGCCTCATGTTTGGTGTCTGTTGATGCCCTCCCACCTGCTCCCTGGCAAGGCCTCCGATCCAGAGTGTTGTGACCGCAGCGATGGCCAGATTGAACCCAGCGGGGTGAGGTGTGAGGGGAAAGGTGTGACCTGCTGCTTGAAAAGTCTTTTTTAGCCTCTGAAATGGACTCCCGAGTGACAGTTACCATCTTAAACCTGTAAACATCGGCCGTGTTTTGACTGCTGGTTCACCTGGGGTCTTTTTTTGTTGTGGTTTTTTCAGGATAGCTCTTGGCTTGCCCTCTCTATAACAAATATGCTTGCCTGACACACTTTCCTGAGCCGATGCCGTTCGCTCTTCCAAAGCATCTGCACAGCTAAGTCAGCAGTAACGGTTCTGTGTTCTGGGGATGCACAGATTGAGGAAAGAGGCATGAGTTTCCTCTCAGCTCTGTGCAGTGTACTGTATGCAAATCTGAAAATCTGAATTCTATGTCCTTATATTTGCCCTCAGGAGGATTTGGCTGATATATAAAATATTCACAATATATTTGAGATGATTCTGCTGGCAATATCGTGTGAATTTTACAATAATTCTAATACATTGTTGTCTATCAAGTTTACTCAAGACTGTGTCATTAGACTTACATGATTTATAAGGATTTGGAGTCTGTCATTTGGACATCAGCATGATGTGAGTCTGTTCAAACTGTCTGTTTCAGTGAACTGATTCAAAATTCGTTTTCACAGACTCTTTGGTGCATCACTCAAAAATTGTGGCATAATAAAATGCAGAAATAGTATATATTTGATAAAGATACCATTCAGAAGTTTAGAGTTGGTAATGTTTTATTAGGGGTGTAATGGTACACATATTCGTCATATACGATGAATACAGCGTTGTAGCCTAACCACCATTAACCATCAATAATCGCAAAAAGCTCTGTGTTTTGTTACTTTCGATAAGAAACAATATGTCATCTTTCAAATTCTGTCCATTTTATCATGAAATTAAAACAATAAATGCCGTTTTGGCACGCTTTGATATGGCGTGACTGATTGCTGTATAGGTGCCTCGGTTCAAGCGCGAGCGAATGAAATCATCCCTTCTTATTTACTACTAGTTACAGAATAAACATGAATGAACATCTGAAGGTGTGTCGAAAGATACAGTACAAATTACTGAAACGAATTATGTCTGATGTAATGCCTTAATCAGTGTTTTAACCACGGAAAGACATCAGTAAAACAGCTTGTAAACAATCACGTAGCGTAGCATTTACCTCAGGCAAGTCATTCAGTGTCCACAGCATGTGAGTTCACTAGAGAAATTAACTCTAGAGTGGAGCATTTCATTAAATATATGCACTATATTACCCTATATATTCATATTTTACTTAACCTATTAGTGATGTCTTGATTATTTAAAGCTGCAATCCGTAACTTTTTTTGGTTAAAAATGATCCAAAATCTATTTTTGAACAAGTACATAACCAGCCAGTGTTCAAAACTATCTCCTTACCTTAGCCCGATTCACAATCGTCTTTGTGTCATTACGTCATGTCTGTTTACATAAAGAAGGAGTCCCAGCTAGTAGGATATATGGCATGCGAGGATGCTGCAGGGAAATGCTGGTATCATCACATCTTTAAAGTTTCAGTACCGAAGTCGGTAGTTTTGACGACACTAATCACGACCGTTGCTCAAGGTCTAGTGTGACCGCGGCTTTATACTCGCATCTTTATAAATGAGGCCCCTGATAAATTTGATCAGTTTCTACTCACATTTGGTATTTGATTAGTGTTAATTTTGGACCCTGCCCTCATGCATTCAGCAACACACTTCATTTTGACAGTGTTTTCATATTGCTCTCCAAAACCCATTTATCAGTTGAACTGAAAAGACATGCACAAGCTCTGCATGCGTCAAATGAGACTAAAAGGTCGTTCTCCACTGACATCTTTTGAAACACGCGCACACACAGTCGACACAGCTGCCGAGGGCGTATTTCTGCTACATGGCAATACAACAGAATGCTTGGTTATTTTCCCTAGGCCACCTCACCAATGATAAGTCAGGATCATTTGTATCTCGGGCTCTGGAATGTTCATGGGTTTAGGCCAGAATTTCAAATGTGATTTTAAGATTTACCACCCTGGTCTGCTCTTAAACATGATTGTTTCTTTATAACAGCTGTTTTGTTTCAGTTAAGATCACTGTGTGTTTTTATTATTATTACTGATACCCATGATTCCTGCTGATGTAGCCTTACTGATCAGCTCTAATAATATTTTTCTCACGTGCAAAATTTGATTGACTTTAGGCTGTTTATGTTGCATGTTTTGCTGTGGATAATTATTAAGACAGCCTGTGTACACTATAAATGATGCATACATATTCTTTCCTATTATATTTTTCACCTATTGGCACCTTCGATTATATAATTTCATCCCAGCTAGAAGAAATGTGTAATTTCTGCGGCACAAAACAATTGCAATCTGTTTCTTTGGCATGAGTTTGGGGGGGCAGAAATGTTCTAATAAAATGTGATGCATCTCTTAAGGAAAGTATAAAAAGACATTGAAATGCTTTTCAAGTACAAAGACCTTTAAAATGAATGTGTAATGCCGTAAATCCCACCTGTTGTACTGTAAATACCTCTTGAGAAATTCTTGTGGCTTGAATGTGGAAATGAGTTCCCCTCCTCCATGCATGTTGAAGATTAGCGGCAAGGCACTCAATTTATTATGCGTTTCCACACAGAATCTGTTTAGTCACTGTACCGAGGCATTTCATCCTTTGACTTCCATTCAAACAGACAGGGGAATGATTGAAGTCATTATTTTTTGCAATTTTGTTTGTTACCGCTAGTGGCGCACAAATTACACACTTCAATTCTCACCTCACCAAAACTGTCAGTGTGGTGTTGCTATAGTTGAGCAATTTATTTCCAGTATCGAAGCCCTTTGATTTAAGTTTTCCCTTTTTTTTTTTTTCTGAAGATTACGTACCAAGGAGAAGTCATGTTGAGTTACCCTTTTATCCAAATCTGAACTTTTTCAGTCAGCAATCAATATGTATTTCATCCTCCACATTTAAATGTCTAAAATGTGGTATTGAGGCTGAAAGTTGAATGTAACTGCTTCAACATGTGATTCATTATTCAACCTCTAGTTTACACTTCTTGCCATTTTTTCCAATTGCACTAGAGGAAACAATTTTCTTTCCCAGTCTTATAACAGAAAATGCTTTCTTATTGAGGTAATCAAGTACAAAAGAATGCATTTAGGCTATAAAGATATATATTTCTATATTTTTATTTGGTATCTGTTGAGCAGTATCATGCACTGCAGCCAAATCTTAGATATGCACCCGAGTTAATTTACACCAAAATCAGACATTTTATGATTTAATGTCCATTATGAGCACAGAACTTTTATAATATTGGAATCGAACTCTAAAAGGTATGCACATCCGTGCACATGGCCGGAAATGATGTCATACTGTTGCTTTAAAATAACTAATTTATCTGGAATTATTCAACACATTTTGTTGTTTTTTTAGATTCAGCGTTCAGTTTCTTGTTGTCACATTTACCATACGTTTTGCACTGCTTTGAGATGTAATTTGTGTCAGTGTCTTAGGCTCTGTTATACATTAAGTTAGATTGTATGTTTACACAAGACTATGTCTTGTGATATATGTATGGAATGTTTTATTTGATGTTATGTTTAGTCCATAATGTGCTGTACTCTAGATCACTGTACAGATGCATATTAATATTCAGACAGCAGCATGCGTAACTTTGACATTTTTCAGTAGCAGAATGCTTTACCAAGGGAGGCTGTTGTTATTTTTTATTACTATTGTTATGCCTATTATTTCACAAATGCAATAAAAATAAATGTGCGTATAGGACTGCAGTGGCGTGTCGAAAATGATTAACTATTTGGTGGAAAACTCGGTATGGCATTACAAACGGCTTTTATATTTTTTTCATGTTTCATCTCTGCCCGACCTCATGATATCACATGATGTTGTTCTCATAAATCATGTGGTTGATTTGCACTCATAATTTTAATACACATTAACTCACACTGTGCACATCTGAAATCATTACATTCATTTTGTTGGTCATGCAGTTTTTCAATGTACTAGAGCAGCAAAAAAAAAAAAGGAAGAAAAAAAAAAAACATCTACCTGTCTGTGCTTCTGTAAATGATTCTGTTTGGGGGAAAAAATGTAACAGAGTAATTATTTTATGTTGGACAATTTGCTGCTTGCAGGTCTATATTAGATTCAATTTACTGCTGAGTTTAGTTTAACTTTGAAATGTTTTGTAAAAAGGAGAGAATAAAGTTTGTTTTTTTC

Function

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 1-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU65735 True 6199 lncRNA 0.37 2 12305639 12372174

Neighbor

gene id symbol gene type direction distance location
CI01000009_12249416_12290497 COL18A1 coding upstream 15041 12248963 ~ 12290598 (+)
CI01000009_12198114_12221988 NA coding upstream 83646 12196699 ~ 12221993 (+)
CI01000009_12130688_12146560 CTDS1, CTDSP1 coding upstream 158697 12130688 ~ 12146942 (+)
CI01000009_12050866_12109305 SPEG coding upstream 195541 12050773 ~ 12110098 (+)
CI01000009_12028975_12032758 NA coding upstream 272602 12028495 ~ 12033037 (+)
CI01000009_12387605_12388405 LRRC3 coding downstream 13048 12385222 ~ 12390665 (+)
CI01000009_12432736_12435509 NA coding downstream 60364 12432538 ~ 12436017 (+)
CI01000009_12504532_12504815 NA coding downstream 132206 12504380 ~ 12504894 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding downstream 274310 12646484 ~ 12653857 (+)
CI01000009_12854692_12859028 NA coding downstream 482019 12854193 ~ 12861031 (+)
G57850 NA non-coding upstream 116819 12188545 ~ 12188820 (+)
G57737 NA non-coding upstream 133499 12171363 ~ 12172140 (+)
G57724 NA non-coding upstream 137418 12167531 ~ 12168221 (+)
G57813 NA non-coding upstream 367000 11938378 ~ 11938639 (+)
G57871 NA non-coding downstream 28304 12400478 ~ 12401052 (+)
G57890 NA non-coding downstream 82612 12454786 ~ 12455080 (+)
G57896 NA non-coding downstream 90372 12462546 ~ 12462952 (+)
G57900 NA non-coding downstream 98108 12470282 ~ 12470604 (+)
G57903 NA non-coding downstream 101761 12473935 ~ 12474530 (+)
G57811 NA other upstream 370388 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 538695 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2449052 9853929 ~ 9856587 (+)
G56100 NA other upstream 3175353 9129300 ~ 9130286 (+)
G53651 NA other upstream 6057247 6245564 ~ 6248392 (+)
G57682 NA other downstream 453295 12825469 ~ 12892339 (+)
G57691 NA other downstream 534270 12906444 ~ 12918465 (+)
G57701 NA other downstream 634469 13006643 ~ 13023138 (+)
G58028 NA other downstream 768204 13140378 ~ 13143608 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038080 NA non-coding NC_007120.7 CM002893.2 42130055 ~ 42133113 (-)
tiger barb (Puntius tetrazona) G71912 LOC107602164,LOC107660650,LOC107728931 non-coding NC_056707.1 CM032076.1 20163123 ~ 20630423 (-)