G27461


Basic Information

Item Value
gene id G27461
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50954618 ~ 50972656 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36887
TCCATTTTTAATCATTCTCTCTTGTTAAAATTACACAACAGCTTTACATTGCACAATTGAGTTATAGattaaactgagcttttttcAGGGTCACTAGACTAGGACTTGGGTCACCATTAAAAGCACTAATCCTAAACCGACAGGCTCTGTTTTGAACTTGACTTGGAATAGAACAGCCCAGCTAAGTTCAGGTGGTGAGGACAgcgagaatgtgtgtgtgtgtgtgttcttgaaaGTTTAAATGCATTATGCTCTATACCATAGTGTCTAAATCTAATTTAACTGCTGACATTAGATTAGAATCGATTGAATCTTAATCGAGTAATCATTATGCTGAACATTTGCTAGAGCCTATTAcagttttatacttttttcagACCAAAAGCACATGCATCAGAAGCctttagggtgtttttacacATATACTGTCTGGTAAATCAGACTCTGGTTTGTATTCACCCTTAGTGAGGTTTATTTTGGCTGGTGCAAATACTGTAATTGCACTCGCATGAGGACCAAAATAACCGTACCAAGACTCCTGAGATGATGATGTGGTCTCGGTCTGGTCCCAAAGAACTCCAGAGTGATTTGTTCATGGTGAGTAAGTGATCAGACTTCAACACAACCAAAATATCACAGTACTTTAAACTATATCAGCACTCCTCATGTTTGAgctaaatggctgttcaggtgcagtttaatctgatttattacctAGACATTTACAACAACTATTTACTAATGCCATTTCTGCCATGAGCTAATCCAGAACACAggcttcttcctgtatttaattTCTTGCTCCCATCCCACAGAGCTCTGACCCACTAACAGATACATTTGTTGTGACCCATTTTGTTGCACTTGCGGTTTTCCTTGTCTatgaccaaaccaaaccaagggggAAAATGCTCCAAGTTTATAAAGTCATTAAATGATACTGATTCTGACCAGAGAAATGAACcataggtgtgaaaacacccttagagGCTTTATAGTCCCTTATGTTCACGGCTCAATATAACGACATAACCATTCTTAAGAAACCAATAGACGAGGAAAAAGGTCTacaatcttaaaaataaaggatcTTGAACAGATTCTGATTTGGAGGTGAAGGTTATAGTAAAAGCATGGAAGCTGTACATTACGGGGATGttctttaatgtttaaaaaggttctttactttattttactttaaagaacaattcatttaaatttcttGAGGAAACCAAAAGTAGGTAGTTCAAATAATCCTTCtttggcacctttatttttaagagtgtagttTAAAAAACTGAATCCATccacccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36887 True 1345 lncRNA 0.36 2 50954618 50972656

Neighbor

gene id symbol gene type direction distance location
ankrd6 ankrd6 coding downstream 99303 50779334 ~ 50855315 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding downstream 251500 50582347 ~ 50703118 (-)
LOC103033334 NA coding downstream 373936 50573760 ~ 50580682 (-)
epha7 epha7 coding downstream 1013612 49808094 ~ 49941006 (-)
LOC111191920 NA coding downstream 1518965 49434912 ~ 49435653 (-)
pm20d2 pm20d2 coding upstream 176807 51149463 ~ 51174390 (-)
pnrc1 NA coding upstream 201828 51174484 ~ 51178351 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding upstream 273133 51245789 ~ 51421392 (-)
LOC103038926 NA coding upstream 483001 51455657 ~ 51460083 (-)
LOC103045300 NA coding upstream 492628 51465284 ~ 51481876 (-)
G27454 NA non-coding downstream 68722 50885531 ~ 50885896 (-)
G27428 nup43 non-coding downstream 207735 50744958 ~ 50746883 (-)
G27425 NA non-coding downstream 230695 50721697 ~ 50723923 (-)
G27409 NA non-coding downstream 405190 50546608 ~ 50549428 (-)
G27407 LOC108415780,LOC108431875 non-coding downstream 412559 50540122 ~ 50542059 (-)
G27502 LOC108427479,LOC103380695 non-coding upstream 56500 51029156 ~ 51031301 (-)
G27504 NA non-coding upstream 66974 51039630 ~ 51044207 (-)
G27523 NA non-coding upstream 212072 51184728 ~ 51185242 (-)
G27619 NA non-coding upstream 788268 51760924 ~ 51761490 (-)
G27621 NA non-coding upstream 813406 51786062 ~ 51789157 (-)
pcmt1 pcmt1 other downstream 214184 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 414946 50522899 ~ 50539672 (-)
G27400 NA other downstream 422979 50481889 ~ 50531639 (-)
G27258 NA other downstream 1315174 49638759 ~ 49639444 (-)
G27145 NA other downstream 2063590 48886994 ~ 48891028 (-)
LOC103040973 NA other upstream 1321224 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 1813816 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 2649415 53622071 ~ 53622358 (-)
akap7 NA other upstream 2770224 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 3077139 54049795 ~ 54055697 (-)

Expression


Co-expression Network