G27258


Basic Information

Item Value
gene id G27258
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49638759 ~ 49639444 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36629
ATAGAGTGTGGGCAACTACGTCATGGCGCGTTGCATGCTGGGTAGCGGCCGCCATGTTTTAGGACACTCTATCAAAACATAAATGGACCGTGCGAAGAGCAAGTGCAAGATACCTTACCGCGATAGGCTAAACAAAGAAGCAAAGGAACGCTACCTTGAGAAAATTGAGGGAATTAATGGGCTTGATCCGTACGAACATCATGAGTGGACAGGTGATTTTAACGAGCTACCACAAATTACTATTCCTGACGTGTTTAGCTACCTTGTTTGTGGCGTGAGCGCCTACACATTCGAGCAGTTCAGGAATTATAAATCTCTCGAAGCTCATCTTCAGTTTACCAATGGATGGGTGCAGGACCTGCAGATTTTCAGAGTCAATGACCAAAAAACCGTCGTTCTCACAAAGGTAGGtgaacagtacacacacacacacacatgcacatacctacacacacatacatacatacatacatacatacatacatatatgcacatacctacacacacatacatacatacacacacgcacatacatacatgcatacacatacacaccatacacacctacacacacatacatacacacacacacacac
>TU36630
ATAGAGTGTGGGCAACTACGTCATGGCGCGTTGCATGCTGGGTAGCGGCCGCCATGTTTTAGGACACTCTATCAAAACATAAATGGACCGTGCGAAGAGCAAGTGCAAGATACCTTACCGCGATAGGCTAAACAAAGAAGCAAAGGAACGCTACCTTGAGAAAATTGAGGGAATTAATGGGCTTGATCCGTACGAACATCATGAGTGGACAGGTGATTTTAACGAGCTACCACAAATTACTATTCCTGACGTGTTTAGCTACCTTGTTTGTGGCGTGAGCGCCTACACATTCGAGCAGTTCAGGAATTATAAATCTCTCGAAGCTCATCTTCAGTTTACCAATGGATGGGTGCAGGACCTGCAGATTTTCAGAGTCAATGACCAAAAAACCGTCGTTCTCACAAAGGTAGGtgaacagtacacacacacacacacacatgcacatacctacacacacatacatacatacacacacgcacatacatacatgcatacacatacacaccatacacacctacacacacatacatacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36629 True 596 TUCP 0.43 2 49638759 49639444
TU36630 False 546 TUCP 0.35 2 49638759 49639444

Neighbor

gene id symbol gene type direction distance location
LOC111191920 NA coding downstream 203106 49434912 ~ 49435653 (-)
map3k7 map3k7 coding downstream 491276 49119962 ~ 49147483 (-)
bach2 bach2 coding downstream 562865 48909552 ~ 49075894 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding downstream 787114 48746900 ~ 48851645 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding downstream 903389 48723000 ~ 48735370 (-)
epha7 epha7 coding upstream 168650 49808094 ~ 49941006 (-)
LOC103033334 NA coding upstream 934316 50573760 ~ 50580682 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding upstream 942903 50582347 ~ 50703118 (-)
ankrd6 ankrd6 coding upstream 1139890 50779334 ~ 50855315 (-)
pm20d2 pm20d2 coding upstream 1510019 51149463 ~ 51174390 (-)
G27240 NA non-coding downstream 176843 49461497 ~ 49461916 (-)
G27237 NA non-coding downstream 204920 49432675 ~ 49433839 (-)
G27234 NA non-coding downstream 244939 49389851 ~ 49393820 (-)
G27228 NA non-coding downstream 317381 49317452 ~ 49321378 (-)
G27219 NA non-coding downstream 414437 49221786 ~ 49224322 (-)
G27262 NA non-coding upstream 118187 49757631 ~ 49757830 (-)
G27283 NA non-coding upstream 126258 49765702 ~ 49765941 (-)
G27278 NA non-coding upstream 163839 49803283 ~ 49804689 (-)
G27279 NA non-coding upstream 165520 49804964 ~ 49807298 (-)
G27301 NA non-coding upstream 481754 50121198 ~ 50122158 (-)
G27145 NA other downstream 747731 48886994 ~ 48891028 (-)
LOC103039734 LOC108424428 other downstream 1314097 48217506 ~ 48324662 (-)
pln NA other downstream 1350023 48278262 ~ 48288736 (-)
G26754 NA other downstream 2900023 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 3102924 46533695 ~ 46535835 (-)
G27400 NA other upstream 842445 50481889 ~ 50531639 (-)
LOC103034285 NA other upstream 883455 50522899 ~ 50539672 (-)
pcmt1 pcmt1 other upstream 1085619 50725063 ~ 50740434 (-)
LOC103040973 NA other upstream 2654436 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 3147028 52786472 ~ 52849906 (-)

Expression


Co-expression Network