LOC103039734 (LOC108424428)


Basic Information

Item Value
gene id LOC103039734
gene name LOC108424428
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48217506 ~ 48324662 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36209
CAGAAAGTTTACATGGGAACTCTGGCAGTGCGAAGCTGAGCAGACTGATCTGGCTGTATCTTCACTCTGGTCAGCAGCTCTATCTGGAGGCGGTGAAGGAGCTGGTCCTGCAGTGCGCTCAAACCCACTTCAACTACCTCACTGCCAGCGCTCTCTCCCAGAGACTGTGGAGACAACCTGTGGCTTAGACCAGACCAGACTCCTCCCACCTCACCCTGGACCAACTGCTTTCTAATaagcctatatatatatttttaaataatgttttaaagcttttagGCAAACAAAACAcgatttgtgtgtatttttataatcttaattttaaatttgagatttttttatttttttttttttaattggtccagtttttgtttttttatttttgagacTGGACTTTAGTTTACCTTTTGCTTGAGGGTCTGTTTGAGAGGGCTACAGGCTTGAAAGACTgaaatcacttttttatatatttatttttttatctgcacTCATAACTgctagaaaagttttttttttttttgtgtgtgtgtatatagattTTAGGTAAGGATTTAAATGAGGGCTATGAATAATCTGCTGTTCCACCTAAATTGCCTTTTAATGGTTGTGATGTTTTAGCTTTGATGGCTGATCTGGAACAGATACACTCATGGGAAAACAAGACaggtttattaatatttattttttttacagctgaaGAAAGATGATTACTTGTACGTTTTTTATTGAAATGCAAAAACATCGCATTAGCCCTGAGACTATTAAAAGTCCTTTCATAATCTAaaaaaaaaaaaac
>XM_007255373.3
CTTTAATCCGGGTCCGGGTGAGGGGGCAGGTGGGCAGGGCAGGTATGGCGCATCCAGACACCTGGGAGAGCGAGGGTCTGCTGGAGCAGTTCTCCAGACTGTCCGCGGTCGCAGAGGAGGATCTGACCCCAGGAGAAGGAGGTGAGGGCGGTGGAGAGTCTGTGGTGGAGGGTGAGGGCAGCGCCGGGATGCTGTGTCTGAGTGATGAGGTTCTGCTGGTGATCCTGAGGTTCCTGGACCCCATGTCTCTGCTGAGAGCGGGCAGCACCTGCAGGCCGCTCTTCAGAGTCTGCTCCTGTAACTCGCTCTGGACCAGACACTTTCGGGATTCATTTCAGGTCAGCCTTCCAAATAGCACAGCTGGTTCTGTCGTCCCGGCCAAGACTGCTTTCCGCTTGGTGTTCATGTGGAGAACTCTCTTCCGGAACATTCACTGTAACCGCTCGCTTCAGGAGAAGCTCTTCACTGAATTCCCCTTTCCGCCTCGTTCTTACTGGACCCAGTGGCTGGTGCTGGAGGAGCGCGTACCCCTGCCCTCAGCTAGGCTTTCATGCAGTGATGTGGAGAAGCTCTGGGGCATCTCCAGAGACCTCTTCAAAGAGAAGCTTCAGGagaaagaagaaggtgACACCCTCAAATTTGAATGGAGGGAGTTGTTCAGCTTTGCCCTCAGCCATCACGGCAGTGTAGCGATGGTATTCCAGCACGTTCTTGCCCAACACCAAAGCAGCGACCACTCTGAGCTGGAGTCTATGTATCATCAGTACACACAGTGCCGGTTTCAGTGGCTCTTCACCTACTGGCTTTTCCGGCAGCCCTCGCCATTGAACCGACAGCTGCGGTCCATCTTCCTTCAGTGGAGGAAGCACAGCAAGAAGAAAGTGGCTACGTGGGGAGAAACGTTGTGTGACGTGAGATACCTCGCCTCTCTCCATCCAATCACTAGTGACTACTGGAGGGGCCGCCTGGCTCAGGGAGACGAGAACGTGGGTATTCATACAGTGGGAAACTACTTCTCCATGTGCAAGTCACTGGTGGCATGGATTCTGGGCCGTGACTGGGGCAAATTGAAGCGCAGAAAGGTTTATGAGGACACTCTGGATGGTGTGTACATGCTCCTGAAGAGGGAGATGCGGGAGAGCCTGGTAGAGCATGAGCGCTTCTGGCAGGTGGCTAAAGTCCAGATGAGCAGAGTGTGCACCTTGGAGGAGACAGCTACCAATTACGTCAACTGGAAGATGATCGAGACGCTTCCGTATTACAAGTTGTACTTGGTGTCTGGCAATGGCGTCTACCTGGAGCACGTGAAGGGTTTTCTGCGCAGGAAGAGAATGGTCCATAACTGGATCTTTCTAGATGAGAACGCCTGGCTGAGAGAGCTGCTGCCAGATGAGCTCTATACCCTGCTGGAGTTCGACACCAAGATCGCTCAAGAAAGTTTACATGGGAACTCTGGCAGTGCGAAGCTGAGCAGACTGATCTGGCTGTATCTTCACTCTGGTCAGCAGCTCTATCTGGAGGCGGTGAAGGAGCTGGTCCTGCAGTGCGCTCAAACCCACTTCAACTACCTCACTGCCAGCGCTCTCTCCCAGAGACTGTGGAGACAACCTGTGGCTTAGACCAGACCAGACTCCTCCCACCTCACCCTGGACCAACTGCTTTCTAATaagcctatatatatatttttaaataatgttttaaagcttttagGCAAACAAAACAcgatttgtgtgtatttttataatcttaattttaaatttgagatttttttatttttttttttttaattggtccagtttttgtttttttatttttgagacTGGACTTTAGTTTACCTTTTGCTTGAGGGTCTGTTTGAGAGGGCTACAGGCTTGAAAGACTgaaatcacttttttatatatttatttttttatctgcacTCATAACTgctagaaaagttttttttttttttgtgtgtgtgtatatagattTTAGGTAAGGATTTAAATGAGGGCTATGAATAATCTGCTGTTCCACCTAAATTGCCTTTTAATGGTTGTGATGTTTTAGCTTTGATGGCTGATCTGGAACAGATACACTCATGGGAAAACAAGACaggtttattaatatttattttttttacagctgaaGAAAGATGATTACTTGTACGTTTTTTATTGAAATGCAAAAACATCGCATTAGCCCTGAGACTATTAAAAGTCCTTTCATAATCTACTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108424428

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36209 False 796 lncRNA 0.36 2 48217506 48313816
XM_007255373.3 True 2217 mRNA 0.48 8 48313031 48324662

Neighbor

gene id symbol gene type direction distance location
hsdl1 NA coding downstream 1078188 47134735 ~ 47139318 (-)
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding downstream 1083205 47129070 ~ 47134301 (-)
LOC103043748 LOC108424468 coding downstream 1088724 47126477 ~ 47128782 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding downstream 1093036 47122168 ~ 47124470 (-)
LOC103044065 LOC108424424 coding downstream 1115875 47096096 ~ 47101631 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding upstream 1223 48325885 ~ 48446366 (-)
cdk19 cdk19 coding upstream 120715 48445377 ~ 48539382 (-)
ppil4 ppil4 coding upstream 237842 48562504 ~ 48576593 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding upstream 398338 48723000 ~ 48735370 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding upstream 422238 48746900 ~ 48851645 (-)
G26944 NA non-coding downstream 2248 48212095 ~ 48215258 (-)
G26888 NA non-coding downstream 328160 47887751 ~ 47889346 (-)
G26868 NA non-coding downstream 519926 47697381 ~ 47697580 (-)
G26863 NA non-coding downstream 535745 47681169 ~ 47681761 (-)
G26859 NA non-coding downstream 547044 47667957 ~ 47670462 (-)
LOC111188411 NA non-coding upstream 68459 48393121 ~ 48394416 (-)
LOC111188398 herc2 non-coding upstream 111114 48435776 ~ 48438690 (-)
G27029 NA non-coding upstream 227574 48552236 ~ 48552562 (-)
G27030 NA non-coding upstream 228170 48552832 ~ 48553160 (-)
G27035 LOC108427529 non-coding upstream 261385 48586047 ~ 48694424 (-)
G26754 NA other downstream 1478770 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 1681671 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 1691510 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 1781581 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 1924700 46292087 ~ 46292806 (-)
G27145 NA other upstream 562332 48886994 ~ 48891028 (-)
G27258 NA other upstream 1314097 49638759 ~ 49639444 (-)
G27400 NA other upstream 2157227 50481889 ~ 50531639 (-)
LOC103034285 NA other upstream 2198237 50522899 ~ 50539672 (-)
pcmt1 pcmt1 other upstream 2400401 50725063 ~ 50740434 (-)

Expression


Co-expression Network