LOC111188398 (herc2)


Basic Information

Item Value
gene id LOC111188398
gene name herc2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48435776 ~ 48438690 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002648479.1
CCATGTAGCCCTCCACAGTGCAGCTCACCCACCTCGGGCAAGggtaCATTGCAGGAGGTGATTGGCTGGGGTCTGCTGGGATGGAAGGTTTATGCTAACGTGAACGGACCAATCCAGTGCAAGGCTTTGTCCAGCCTGGGCGTAACCCAGATTGTGTGCTCAGAGAAGGGATTTCTCATTCTGTCCATCTCTGGTGCCGTCTACACCCAGAACTATAAAAGTACTACCCTGTCGCCTATGTTAGTGCACGGGCTGTCATCCAGGAAGATAGTGAAGCTGGCAGCTCACCCAGAAGGCCAGCACTACTTGGCTCTTTCAGCCAATGGAGAGGTTTTCTCCTGGGGCTGTGGAGATGGAGGTCGCCTGGGACATGGAGACACCACGTAAGAGCCTCTGTGACACTTTAACTAACAGACTAATCCTATCTTGTCATGTTCAAATTGTTCTGATTTCAAGTAga

Function

symbol description
herc2 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and pigmentation disease. Orthologous to human HERC2 (HECT and RLD domain containing E3 ubiquitin protein ligase 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HERC2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002648479.1 True 460 lncRNA 0.52 3 48435776 48438690

Neighbor

gene id symbol gene type direction distance location
hsdl1 NA coding downstream 1296458 47134735 ~ 47139318 (-)
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding downstream 1301475 47129070 ~ 47134301 (-)
LOC103043748 LOC108424468 coding downstream 1306994 47126477 ~ 47128782 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding downstream 1311306 47122168 ~ 47124470 (-)
LOC103044065 LOC108424424 coding downstream 1334145 47096096 ~ 47101631 (-)
cdk19 cdk19 coding upstream 6687 48445377 ~ 48539382 (-)
ppil4 ppil4 coding upstream 123814 48562504 ~ 48576593 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding upstream 284310 48723000 ~ 48735370 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding upstream 308210 48746900 ~ 48851645 (-)
bach2 bach2 coding upstream 470862 48909552 ~ 49075894 (-)
LOC111188411 NA non-coding downstream 41360 48393121 ~ 48394416 (-)
G26953 NA non-coding downstream 176084 48259382 ~ 48259692 (-)
G26944 NA non-coding downstream 220518 48212095 ~ 48215258 (-)
G26888 NA non-coding downstream 546430 47887751 ~ 47889346 (-)
G26868 NA non-coding downstream 738196 47697381 ~ 47697580 (-)
G27029 NA non-coding upstream 113546 48552236 ~ 48552562 (-)
G27030 NA non-coding upstream 114142 48552832 ~ 48553160 (-)
G27035 LOC108427529 non-coding upstream 147357 48586047 ~ 48694424 (-)
G27046 NA non-coding upstream 195758 48634448 ~ 48634837 (-)
G27062 NA non-coding upstream 237063 48675753 ~ 48676840 (-)
LOC103039734 LOC108424428 other downstream 111114 48217506 ~ 48324662 (-)
pln NA other downstream 147040 48278262 ~ 48288736 (-)
G26754 NA other downstream 1697040 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 1899941 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 1909780 46518871 ~ 46525996 (-)
G27145 NA other upstream 448304 48886994 ~ 48891028 (-)
G27258 NA other upstream 1200069 49638759 ~ 49639444 (-)
G27400 NA other upstream 2043199 50481889 ~ 50531639 (-)
LOC103034285 NA other upstream 2084209 50522899 ~ 50539672 (-)
pcmt1 pcmt1 other upstream 2286373 50725063 ~ 50740434 (-)

Expression


Co-expression Network