hsdl1


Basic Information

Item Value
gene id hsdl1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47134735 ~ 47139318 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255385.2
TCGGctttgcgtgtgtgtttgtgttgtgttcaggCTGTGAAACGGTGCAGGAAAAGTCTGGATCATTCATCAGTGTAAACAGTCAGTTTAAAACCTCACACCTGTTAAATAGaggctgaaagagagagagcccaGCTCGCCCGGTAGGCTGTGTGCTCGGTTTAGTGGGGTTTGTTCAGTATTAGCTTTAAACAGGCTCGTTTGCTtattagttagctaaagttagctatcAGTAATTCTCCTCTTATGGCTGCTGTTGATAGCTTCCAGTTTCTGTACAGAGAAATCGCCAGATCCTGTAGCTGTTATGTGGAGACCCTGGCATTAGTGGGAGCTTTGTACACAGCGAGCAAAGCTGCTGTGCTCGTGCGGGACTGTTACAGCCTGGTGCGGCTTCACTTCATCCCCAGGCTCGTTCACCCCCGAGATCTGGTTCACCAGTATGGCAAATGGGCTGTCATTAGTGGTGCATCAGAGGCCATAGCCAAAGCATATGCTGAGGAACTGGCCAGACATGGTGTGTGCATCATCCTGATAAGCCCAGATGTCCGCAGTGTAAATGATGTAGCAAAGTCTATTTCAGATGTCCATGGGGTGGAGGCCATTTTGGTTGAAGCAGATTTCACACATGGTCTCTCAGTGTGTAAACCTATTAAAGATGCCATCGGAGACAAGGACATAGGGTTTGTTGTGAACTGTCTGGATTCATCCCACAATGTATTCAGAGACTTTCTTGACTTGTCTGAAGGCACCGTTTGGCACATCTTAAACAATAATGTCACCACGGCCACCCTGGTGACCCGTCTGGCTCTGCCTGGCATGGCAGAGAGACAAAGAGGCGCTGTGGTTAATATCTCATCTGAAGGATGTTCCAAGCCCACTTCAAGGAAGGCTGTGCTTTCTGCATCCATGGCTTTCCTTGACCACTTCAGTCGCACCCTGCATTATGAATATGGTCACCGAGGGGTCTTTGTGCAGAGTTTGATCCCCTGTAGAGTTACCTCTAAAGGAGAAGGAGACCTGGGTGGTGCTGGCTGGTTGGTTCCACAGCCACATGTGTATGCAAGGCATGCCCTGTCCACTCTGGGTATCTCCCACAGAACTACAGGATACTGGCCTCATACAATACAGTTTCGACTCATGCAGTGCATCCCAGAGTGGATTTGGATGCTGGGGCATCGACTGCTGTGCAGGACGACCTAACTGCAGACATATTGATGGATTTAATGATGCAAAATATGTTGTAAGCTTTGACACACTTAACACCTCACTAATGTGAGATAAAGTATATCCAACTATCATGATGCAGTGTTTTATAGAGTGCAAATATGGAGATCACCTCGTGTTGTCCTTGTAAAATGATCACAAGATATTTTAGACTTTTCAGACTAGTTTTCATGGGCACTAACAGTTAGTTGATTGAAAATAACTCTTGTTGGATCATTATGGTGTTTGGCACTTACTTTTCTTAAATTATTACAGAAGGAATTATAGTTGTGTTATAAGCAACGTAAGAGTGACCAATAGACATCAGTGTTCTTGGTGTGGTGAGTGTGCTGGTTCTACTCTACTGTGGTACCTTTTTCCTACTTTAGATTTATTTGTGGTAAAAGATTATTCCATTATAGaagattatttttctgtttatatttgctgAAACAATCATTAAACAGTTCTTGTATTACCAATTTA

Function

NR:

description
inactive hydroxysteroid dehydrogenase-like protein 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016229 steroid dehydrogenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255385.2 True 1692 mRNA 0.44 4 47134735 47139318

Neighbor

gene id symbol gene type direction distance location
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding downstream 434 47129070 ~ 47134301 (-)
LOC103043748 LOC108424468 coding downstream 5953 47126477 ~ 47128782 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding downstream 10265 47122168 ~ 47124470 (-)
LOC103044065 LOC108424424 coding downstream 33104 47096096 ~ 47101631 (-)
LOC103045279 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding downstream 39831 47089549 ~ 47094904 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding upstream 1186567 48325885 ~ 48446366 (-)
cdk19 cdk19 coding upstream 1306059 48445377 ~ 48539382 (-)
ppil4 ppil4 coding upstream 1423186 48562504 ~ 48576593 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding upstream 1583682 48723000 ~ 48735370 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding upstream 1607582 48746900 ~ 48851645 (-)
G26783 LOC108424466 non-coding downstream 14729 47117582 ~ 47120006 (-)
G26771 NA non-coding downstream 28411 47105315 ~ 47106324 (-)
G26751 NA non-coding downstream 470772 46662119 ~ 46663963 (-)
LOC111197648 NA non-coding downstream 535304 46578287 ~ 46599431 (-)
G26666 NA non-coding downstream 725671 46395961 ~ 46409064 (-)
G26810 NA non-coding upstream 59546 47198864 ~ 47199418 (-)
G26826 NA non-coding upstream 199103 47338421 ~ 47347966 (-)
G26828 NA non-coding upstream 211295 47350613 ~ 47350891 (-)
LOC111188267 NA non-coding upstream 241524 47380842 ~ 47384068 (-)
G26846 man1a1,LOC107727625 non-coding upstream 296127 47435445 ~ 47569287 (-)
G26754 NA other downstream 395999 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 598900 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 608739 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 698810 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 841929 46292087 ~ 46292806 (-)
LOC103039734 LOC108424428 other upstream 1078188 48217506 ~ 48324662 (-)
pln NA other upstream 1138944 48278262 ~ 48288736 (-)
G27145 NA other upstream 1747676 48886994 ~ 48891028 (-)
G27258 NA other upstream 2499441 49638759 ~ 49639444 (-)
G27400 NA other upstream 3342571 50481889 ~ 50531639 (-)

Expression


Co-expression Network